| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| 16S RNA sequence set for metagenomic analysis | 16S RNA sequence set for metagenomic analysis | 10.18908/lsdba.nbdc02583-001 |
A 16S RNA sequence dataset that can be used for metagenomic data analysis by Kraken2. The header of each record in FASTA format file indicates Taxonomy ID, Accession No, and Definition from the left. |
16S_kraken2_db_7.fasta.gz
( 148 MB) |
- |
https://github.com/bonohu/SAQE/blob/main/101Kraken2.md |
1,153,543 |
Data detail
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| About Libraries | AcEST | 10.18908/lsdba.nbdc00839-005 |
Information about cDNA library of Adiantum capillus-veneris EST (AcEST). CSV format text file. |
acest_library.zip
(2KB) |
http://togodb.biosciencedbc.jp/togodb/view/archive_acest_library#en |
- |
Adiantum capillus-veneris EST library creation information |
4 entries |
Data detail
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| AcEST Contig | AcEST | 10.18908/lsdba.nbdc00839-004 |
Information on the contig sequence comprising Adiantum capillus-veneris EST (AcEST). CSV format text file. |
acestcontig.zip
(1.34MB) |
http://togodb.biosciencedbc.jp/togodb/view/archive_acestcontig#en |
- |
- |
4,298 entries |
Data detail
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| AcEST(EST sequences of Adiantum capillus-veneris and their annotation) | AcEST | 10.18908/lsdba.nbdc00839-001 |
EST sequence of Adiantum capillus-veneris and its annotation (clone ID, library name, Blastx search results, etc.) CSV format text file. |
acest_est.zip
(110MB) |
http://togodb.biosciencedbc.jp/togodb/view/archive_acest#en |
Capillary sequencer |
Functional annotation (Results of blastx search against UniProtKB/Swiss-Prot and UniProtKB/TrEMBL databases) |
Adiantum capillus-veneris ESTs: 30,540. |
Data detail
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| BlastX Result : Swiss-Prot | AcEST | 10.18908/lsdba.nbdc00839-002 |
Results of the blastx search of Adiantum capillus-veneris EST (AcEST) sequences against the UniProtKB/Swiss-Prot (release 56.9) database. The alignment information of each blast-hit is provided on a single line. CSV format text file. |
blasthits_sp.zip
(7.77MB) |
http://togodb.biosciencedbc.jp/togodb/view/archive_acest_blasthits_sp#en |
blastx search |
The blastx search was performed between Adiantum capillus-veneris EST sequences and UniProtKB/Swiss-Prot database. |
282,196 hits |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata