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Life Science Database Archive
RGP physicalmap

YAC contig information

Data detail

info Data name YAC contig information
info DOI 
info Description of data contents 

YAC contigs on the rice chromosomes

info Data file 
File name:
rgp_physicalmap_yac_contigs.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/rgp-physicalmap/LATEST/rgp_physicalmap_yac_contigs.zip
File size:
1 KB
info Simple search URL 
info Data acquisition method 

The range including YAC contig is shown for each the divided region within the chromosome. DNA marker names are different to those in "YAC clone information". For example, P61 and P0061 represents the same marker.

 

Please refer to the following literature for the acquisition method of YAC clone data.

 

Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296.
Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131.
Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140.
Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33.
Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302.
Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942.
Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400.
Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.

info Data analysis method -
info Number of data entries 

38 entries

Data itemDescription
Chrom. No. Chromosome number
Region Region number
Physical map image The file name of rice physical map
First marker First DNA marker
Distance of first marker (cM) Distance of the first marker from the top of each chromosome (cM)
Last marker Last DNA marker
Distance of last marker (cM) Distance of the last marker from the top of each chromosome (cM)