About This Database

Gene Expression Data

Data description

Data name

DOI

Description of data contents

Gene expression data collected by EST, GeneChip, CAGE, or RNA-seq Each data is named "RefEx_expression_[experimental method][the number of tissue classes]_[species]" in general. e.g. RefEx_expression_EST10_human Nevertheless, some data collected by CAGE are named "RefEx_expression_CAGE_all_[species]". e.g. RefEx_expression_CAGE_all_human

Data file

File name :

refex_expression01_cage10_human_prjdb1099.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression01_cage10_human_prjdb1099.zip

File size :

908 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/refex_data_relationship_matrix#en

Data acquisition method

EST
human,mouse,rat: INSD
GeneChip
human: GSE7307（Human body index - transcriptional profiling）
mouse: GSE10246（GNF Mouse GeneAtlas V3）
rat: GSE952（Transcriptome analysis in rat）
CAGE
human: PRJDB3010 (A promoter level mammalian expression atlas (human, ChIP-Seq))
mouse: PRJDB1100 (FANTOM5 Mouse CAGE)
RNA-seq
human: PRJEB2445 (RNA-Seq of human individual tissues and mixture of 16 tissues (Illumina Body Map))
mouse: PRJNA30467（Mapping and quantifying mammalian transcriptomes by RNA-Seq; brain, liver, muscle）

Data analysis method

https://github.com/dbcls/RefEx/tree/master/Rawdata_Processing

Number of data entries

Data detail

No detailed data is available.

Data item	Description