Gene Expression Data

Data detail
Data name	Gene Expression Data
DOI	-
Description of data contents	Gene expression data collected by EST, GeneChip, CAGE, or RNA-seq Each data is named "RefEx_expression_[experimental method][the number of tissue classes]_[species]" in general. e.g. RefEx_expression_EST10_human Nevertheless, some data collected by CAGE are named "RefEx_expression_CAGE_all_[species]". e.g. RefEx_expression_CAGE_all_human
Data file	File name: refex_expression01_cage10_human_prjdb1099.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression01_cage10_human_prjdb1099.zip File size: 908 KB File name: refex_expression02_cage40_human_prjdb1099.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression02_cage40_human_prjdb1099.zip File size: 2.5 MB File name: refex_expression03_cage_all_human_prjdb1099.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression03_cage_all_human_prjdb1099.zip File size: 40.5 MB File name: refex_expression04_cage_all_mouse_prjdb1100.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression04_cage_all_mouse_prjdb1100.zip File size: 21.2 MB File name: refex_expression05_est10_human.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression05_est10_human.zip File size: 597 KB File name: refex_expression06_est10_mouse.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression06_est10_mouse.zip File size: 592 KB File name: refex_expression07_est10_rat.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression07_est10_rat.zip File size: 421 KB File name: refex_expression08_est40_human.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression08_est40_human.zip File size: 1.2 MB File name: refex_expression09_est40_mouse.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression09_est40_mouse.zip File size: 1.1 MB File name: refex_expression10_est40_rat.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression10_est40_rat.zip File size: 550 KB File name: refex_expression11_genechip10_human_gse7307.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression11_genechip10_human_gse7307.zip File size: 1.1 MB File name: refex_expression12_genechip10_mouse_gse10246.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression12_genechip10_mouse_gse10246.zip File size: 898 KB File name: refex_expression13_genechip10_rat_gse952.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression13_genechip10_rat_gse952.zip File size: 143 KB File name: refex_expression14_genechip40_human_gse7307.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression14_genechip40_human_gse7307.zip File size: 10.6 MB File name: refex_expression15_genechip40_mouse_gse10246.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression15_genechip40_mouse_gse10246.zip File size: 2.8 MB File name: refex_expression16_genechip40_rat_gse952.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression16_genechip40_rat_gse952.zip File size: 326 KB File name: refex_expression17_rnaseq10_human_prjeb2445.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression17_rnaseq10_human_prjeb2445.zip File size: 1.9 MB File name: refex_expression18_rnaseq10_mouse_prjna30467.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression18_rnaseq10_mouse_prjna30467.zip File size: 307 KB File name: refex_expression19_rnaseq40_human_prjeb2445.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression19_rnaseq40_human_prjeb2445.zip File size: 3.2 MB File name: refex_expression20_rnaseq40_mouse_prjna30467.zip File URL: https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_expression20_rnaseq40_mouse_prjna30467.zip File size: 344 KB
Simple search URL	http://togodb.biosciencedbc.jp/togodb/view/refex_data_relationship_matrix#en
Data acquisition method	EST human,mouse,rat: INSD GeneChip human: GSE7307（Human body index - transcriptional profiling） mouse: GSE10246（GNF Mouse GeneAtlas V3） rat: GSE952（Transcriptome analysis in rat） CAGE human: PRJDB3010 (A promoter level mammalian expression atlas (human, ChIP-Seq)) mouse: PRJDB1100 (FANTOM5 Mouse CAGE) RNA-seq human: PRJEB2445 (RNA-Seq of human individual tissues and mixture of 16 tissues (Illumina Body Map)) mouse: PRJNA30467（Mapping and quantifying mammalian transcriptomes by RNA-Seq; brain, liver, muscle）
Data analysis method	https://github.com/dbcls/RefEx/tree/master/Rawdata_Processing
Number of data entries	-
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Gene Expression Data

Data detail

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