General information of database | |
 Database name | TP Atlas |
| Alternative name | Targeted Proteins Atlas |
| DOI | 10.18908/lsdba.nbdc01161-000 |
| Creator | |
| Contact address | Yata 1111, Mishima, Shizuoka 411-8540, JAPAN Platform for Drug Discovery, Informatics, and Structural Life Science Research Organization of Information and Systems National Institute of Genetics E mail: |
| Database classification | Metabolic and Signaling Pathways |
| Organism | Homo sapiens, bacteria (mainly those associated with medicine/ pharmacology) and various model organisms (e.g. Rattus norvegicus, Arabidopsis thaliana, Oryza sativa, Yeast, Ciona intestinalis, Drosophila and Bombyx mori). |
| Database description | TP Atlas is a comprehensive "Targeted Proteins Research achievements database" in which you can access a variety of information on the target proteins, their structures, published papers and press releases by navigating the network diagram drawn by Cell Illustrator for each TP Research project. It covers all 35 TP projects ranging from signal transduction networks to enzymatic reaction pathways in the three fields of fundamental biology, medicine/pharmacology and food/environment. (Cell Illustrator is a pathway drawing software developed by Prof. Satoru Miyano and his colleagues at the U. Tokyo) |
| Features and manner of utilization of database | In this database, the background, highlight and outline of each project in "Targeted Proteins Research Program" are summarized. The relationships of proteins or signaling pathways are shown diagrammatically in each project. The diagrams are downloadable. You can also get information of proteins (sequences and structures), genes, and published papers in each project. |
| License | CC BY-SA Detail |
| Background and funding | The Targeted Proteins Research Program (2007-2011) promoted by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan. Project ID: IPC1 Creation and management of information platform in Targeted Proteins Research Program  |
| Reference(s) | |
Original website information | |
| Database maintenance site | National Institute of Genetics, Research Organization of Information and Systems (ROIS) |
| URL of the original website | http://www.tanpaku.org/tpatlas/index_e.html |
| Operation start date | 2008/04/01 |
| Last update date | 2012/03/31 |
| URL of the portal site | http://www.tanpaku.org/e_index.php |
| Whole data download | - |
| Referenced database | NCBI (NCBI Gene) UniProtKB (Protein Knowledgebase) GNP (Genome Network Platform) PDB (Protein Data Bank) Protein 3000 Structure Gallery PPI in GNP PCI (Protein-Compound Interaction Database) |
| Entry list | Available |
| Query search | Available |
| Web services | Not available |
| URL of Web services | - |
| Need for user registration | Not available |
