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Life Science Database Archive
Open TG-GATEs

Cell sample

Data detail

info Data name Cell sample
info DOI 
info Description of data contents 

The list of liver cell samples from which gene expression and toxicity (cell viability) data were acquired.

info Data file 
File name:
open_tggates_cell.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/open-tggates/LATEST/open_tggates_cell.zip
File size:
54 KB
info Simple search URL 
info Data acquisition method -
info Data analysis method 

-

info Number of data entries 

5,990 entries

Data itemDescription
EXP_ID ID assigned to each test which can be indentified by a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are assigned from #0040. IDs for in vitro tests are assigned from #5000.
GROUP_ID ID assigned to each group which can be indentified by a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16)
INDIVIDUAL_ID ID assigned to each sample within a group. IDs are in single digit.
COMPOUND_NAME Compound name
SPECIES Species
SEX_TYPE Gender. Male or Female.
SACRIFICE_PERIOD Duration of exposure on in vitro test.
DOSE Concentration
DOSE_UNIT Unit of concentration
DOSE_LEVEL Exposure level. The ascending order of the levels is Control, Low, Middle, High.
BARCODE Link to "CEL file attributes"
CELL_VIABILITY Link to "Cell viability"