|
Data description
|
Data name
|
Individual list
|
DOI
|
10.18908/lsdba.nbdc00954-01-006
|
Description of data contents
|
The list of rats from which gene expression and toxicity data were acquired.
|
Data file
|
File name :
open_tggates_individual.zip
File URL :
File size :
97 KB
|
Simple search URL
|
http://togodb.biosciencedbc.jp/togodb/view/open_tggates_individual#en
|
Data acquisition method
|
-
|
Data analysis method
|
-
|
Number of data entries
|
23,868 entries
|
|
Data detail
|
|
Data item
|
Description
|
| EXP_ID |
ID assigned to each test which can be indentified by a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are assigned from #0040. IDs for in vitro tests are assigned from #5000. |
| GROUP_ID |
ID assigned to each group which can be indentified by a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16) |
| INDIVIDUAL_ID |
ID assigned to each individual within a group. IDs are in single digit. |
| COMPOUND_NAME |
Compound name |
| SINGLE_REPEAT_TYPE |
Type of in vivo test. Single-dose test or 28-day repeat-dose test. |
| SEX_TYPE |
Gender. Male or Female. |
| STRAIN_TYPE |
Rat strain used with in vivo tests |
| ADMINISTRATION_ROUTE_TYPE |
Administration route |
| ANIMAL_AGE(week) |
Age of animal (weeks). Only rats at 6 weeks of age were used. |
| SACRIFICE_PERIOD |
Sampling time or period on in vivo test. |
| DOSE |
Dose |
| DOSE_UNIT |
Unit of dose |
| DOSE_LEVEL |
Dose level. The ascending order of the levels is Control, Low, Middle, High. |
| BARCODE (Liver) |
Link to "CEL file attributes (Liver)" |
| BARCODE (Kidney) |
Link to "CEL file attributes (Kidney)" |
| HEMATOLOGY |
Link to "Hematology" |
| BIOCHEMISTRY |
Link to "Biochemistry" |
| ORGAN_WEIGHT |
Link to "Organ weight" |
| BODY_WEIGHT |
Link to "Body weight" |
| FOOD_CONSUMPTION |
Link to "Food consumption" |
| PATHOLOGY (Liver) |
Link to "Pathological items (Liver)" |
| PATHOLOGY (Kidney) |
Link to "Pathological items (Kidney)" |
| PATHOLOGICAL_IMAGE (Liver) |
Link to "Pathological images (Liver)" |
| PATHOLOGICAL_IMAGE (Kidney) |
Link to "Pathological images (Kidney)" |
|
