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Life Science Database Archive
RefEx

Tissue Specific Gene Expression Data

Data detail

info Data name Tissue Specific Gene Expression Data
info DOI 
info Description of data contents 

Data of tissue specific gene expression calculated by ROKU method.

info Data file 
File name:
refex_tissue_specific01_genechip_human_gse7307.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_tissue_specific01_genechip_human_gse7307.zip
File size:
560 KB
File name:
refex_tissue_specific02_genechip_mouse_gse10246.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_tissue_specific02_genechip_mouse_gse10246.zip
File size:
485 KB
File name:
refex_tissue_specific03_genechip_rat_gse952.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_tissue_specific03_genechip_rat_gse952.zip
File size:
97 KB
File name:
refex_tissue_specific04_rnaseq_human_prjeb2445.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/refex/LATEST/refex_tissue_specific04_rnaseq_human_prjeb2445.zip
File size:
462 KB
info Simple search URL 
info Data acquisition method 

Tissue specificity is calculated based on gene expression data collected by EST, GeneChip, CAGE, or RNA-Seq.

info Data analysis method 

Tissue specificity is calculated for all tissues using the ROKU method of TCC library of Bioconductor. For details of the ROKU method, see http://bioconductor.org/packages/release/bioc/manuals/TCC/man/TCC.pdf (pp.22-24)

info Number of data entries -
Data itemDescription
ID In GeneChip data and RNA-Seq data, Probe set ID by Affymetrix and NCBI RefSeq ID respectively.
score Entropy score. When this score is smaller, specificity of the gene is higher.
v[tissue ID in RefEx]_[name of tissue] For each tissue, 1: specific high expression, -1: specific low expression, 0: others