[Credits]

Life Science Database Archive
RMG

Genes (including RNA editing information)

Data detail

info Data name Genes (including RNA editing information)
info DOI 
info Description of data contents 

List of genes in the rice mitochondrial genome including information on ORF (open reading frames), transcription and RNA editing.

info Data file 
File name:
rmg_gene.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/rmg/LATEST/rmg_gene.zip
File size:
3 KB
info Simple search URL 
info Data acquisition method 

"Entire Sequence" data in this database

info Data analysis method 

Gene prediction using the tRNAscan-SE, and BLASTN, BLASTX homology search were performed against publicly available DNA databases. The REPuter program was used in the analysis of repetitive sequences.

info Number of data entries 

81 entries

Data itemDescription
Gene Gene.

Gene names ccmC, ccmFn, ccmFc and ccmB were proposed by Faivre-Nitschke et al. (2001).
Comment Comment
Transcription Transcription

nt: not tested
T: transcribed
N: not transcribed
Editing site Editing site

N: not transcribed
Previous reports on editing sites Previous reports on editing sites
Strand Strand

S: sense
A: antisense
exon1 start Start position of exon1
exon1 end End position of exon1
exon2 start Start position of exon2
exon2 end End position of exon2
exon3 start Start position of exon3
exon3 end End position of exon3
exon4 start Start position of exon4
exon4 end End position of exon4
exon5 start Start position of exon5
exon5 end End position of exon5