Database Description

Plant databases - Rice

Microarray, Gene Expression

The Rice Expression Database II INAHO (RED II INAHO) is a database that analyzed the gene expression of rice using a 60-mer oligonucleotide microarray to examine transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice.

You can get the experimental data from the redii_inaho_experiment table. Also, you can find the Accession number for a particular gene from the redii_inaho_probe table. Then, you will then get expression profiles under various experimental conditions against results of Array-BLAST.
 
References:
Yazaki J, Kishimoto N, Nagata Y, Ishikawa M, Fujii F, Hashimoto A, Shimbo K, Shimatani Z, Kojima K, Suzuki K, Yamamoto M, Honda S, Endo A, Yoshida Y, Sato Y, Takeuchi K, Toyoshima K, Miyamoto C, Wu J, Sasaki T, Sakata K, Yamamoto K, Iba K, Oda T, Otomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S.
Genomics approach to abscisic acid- and gibberellin-responsive genes in rice.
DNA Res. 2003 Dec 31;10(6):249-61.
PMID: 15029956
 
Yazaki J, Shimatani Z, Hashimoto A, Nagata Y, Fujii F, Kojima K, Suzuki K, Taya T, Tonouchi M, Nelson C, Nakagawa A, Otomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S.
Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
Physiol Genomics. 2004 Apr 13;17(2):87-100.
PMID: 14982972