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KAIKOcDNA
About This Database

Database Description

General information of database
Database name
KAIKOcDNA
Alternative name
-
DOI
10.18908/lsdba.nbdc00951-000
Creator
Creator Name
Yoshitaka Suetsugu
Creator Affiliation
National Institute of Agrobiological Sciences
Contact address
1-2 Oowashi Tsukuba, Ibaraki 305-8634, Japan
National Institute of Agrobiological Sciences
Akiya Jouraku
E-mail : kaiko-cdna ad
Database classification

Nucleotide Sequence Databases
Organism
Taxonomy Name
Bombyx mori
Taxonomy ID
Database description

KAIKOcDNA is a database of cDNA (EST) information accumulated by the Silkworm Genome Research Program (SGP).
Features and manner of utilization of database

KAIKOcDNA database provides the sets of silkworm partial cDNA sequences with a simple annotation, which submitted to public database such as DDBJ. It allows users to search cDNAs by various methods, e.g. accession number, clone name, BLAST search score, GO (Gene Ontology) term and keywords. Clustering information and annotation of the EST can be referenced from the search results. The characteristic information of the cDNA libraries those are species of silkworm, organ / tissue, and developmental stage, etc.,  is described in "cDNA libraries".
License
CC BY-SA Detail
Background and funding
Name
Grants-in-Aid for Scientific Research <KAKENHI> (No.506015, 1999; No.128102, 2000)
Name
Management Expenses Grants
Name
Ministry of Agriculture, Forestry and Fisheries of Japan (MAFF) commissioned research project "Integrated research project for plant, insect and animal using genome technology (basic insect genome research for creating and enhancing market demand)"
Reference(s)
Article title
Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori
Author name(s)
Suetsugu Y, Futahashi R, Kanamori H, Kadono-Okuda K, Sasanuma S, Narukawa J,Ajimura M, Jouraku A, Namiki N, Shimomura M, Sezutsu H, Osanai-Futahashi M,　Suzuki MG, Daimon T, Shinoda T, Taniai K, Asaoka K, Niwa R, Kawaoka S, Katsuma S,Tamura T, Noda H, Kasahara M, Sugano S, Suzuki Y, Fujiwara H, Kataoka H, Arunkumar KP, Tomar A, Nagaraju J, Goldsmith MR, Feng Q, Xia Q, Yamamoto K, Shimada T, Mita K.
Journal
G3 (Bethesda) / 2013, Sep / vol.9
External Links
Original website information
Database maintenance site

National Institute of Agrobiological Sciences
URL of the original website
http://sgp.dna.affrc.go.jp/EST/
Operation start date
2004/4/12
Last update date
2011/11/11
URL of the portal site
http://sgp.dna.affrc.go.jp/
Whole data download
-
Referenced database

KAIKObase (http://sgp.dna.affrc.go.jp/KAIKObase/)
InterPro (http://www.ebi.ac.uk/interpro/)
SPRINT (http://www.bioinf.man.ac.uk/dbbrowser/sprint/)
Pfam (http://pfam.xfam.org/)
PIR (http://pir.georgetown.edu/pirwww/index.shtml)
ProDom (http://prodom.prabi.fr/prodom/current/html/home.php)
SMART (http://smart.embl-heidelberg.de/)
SUPERFAMILY (http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi)
CATH/Gene3D (http://www.cathdb.info/)
PROSITE (http://prosite.expasy.org/)
HAMAP (http://hamap.expasy.org/)
PANTHER (http://www.pantherdb.org/)
NCBI (http://www.ncbi.nlm.nih.gov/)
WormBase (http://www.wormbase.org/)
VectorBase (https://www.vectorbase.org/)
Entry list
Not available
Query search
Not available
Web services
Not available
URL of Web services
-
Need for user registration
Not available