About This Database

Complex Modeling

Data description

Data name

Complex Modeling

DOI

10.18908/lsdba.nbdc01193-003

Description of data contents

Protein-protein copmlex modeling predition

Data file

File name :

sahg_complex.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/sahg/LATEST/sahg_complex.zip

File size :

147 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/sahg_complex#en

Data acquisition method

If a target sequence was related to a given subunit of a template complex in PQS database with >=80% sequence identity by the BLAST search and all the other subunits were related to any target sequences, the complex model was constructed by MODELLER.

Data analysis method

Number of data entries

8,667 entries

Data detail

Data item	Description
RefSeqID	RefSeq ID
Link to Protein	(only in SimpleSearch pages) link to Protein Basic Information of the same RefSeqID
regionFrom	Starting amino acid residue number.
regionTo	Ending amino acid residue number.
model PDB	(only in SimpleSearch pages) link to model structure (PDB)
Oligomer	homo oligomer / hetero oligomer
Model	Model index (sequential) for a protein
Template	Template for the complex modeling
Partner ID	RefSeq ID of the counterpart protein in the complex.