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About This Database

Known binding site similarities

Data description
Data name
Known binding site similarities
DOI
10.18908/lsdba.nbdc01144-003
Description of data contents
Similarity data between known binding sites
Data file
File name :
possum_kpair.zip
File URL :
File size :
3.9 GB
Simple search URL
-
Data acquisition method

PDB

Data analysis method

-

Number of data entries

52,860,682 entries

Data detail
Data item Description
Q:PocketIndex

Internal ID for query site

T:PocketIndex

Internal ID for target site

Q:PDB_ID

PDB ID for query site

T:PDB_ID

PDB ID for target site

Q:HET_Code

HED code for query site

T:HET_Code

HED code for target site

Q:ChainID

ID for the chain where the query site is

T:ChainID

ID for the chain where the target site is

Q:Res.No.

Residence number for the amino acid where the query site is

T:Res.No.

Residence number for the amino acid where the target site is

Cosine

Cosine similarity with physicochemical and geometric properties

AlignedLength

Length of amino acid alignment

RMSD

Root Mean Square Deviation

TM-score

Template modeling score of protein structure

Pval

P-Value of similarity

AminoIdentity

Amino acid match rate

MolName

Molecular name of the site

EC

EC ID for the site

CATH

CATH ID for the site

SCOPe

SCOPe ID for the site

UniProt

UniProt ID for the site

UniRef50

UniRef50 cluster ID for the site (when it is analysed)

GO1

Gene ontology to indicate molecular function of the site

GO2

Gene ontology to indicate molecular function of the site

GO3

Gene ontology to indicate molecular function of the site

AlignedResidues

Amino acid alignment result