LD bin list (Phase II)
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Data name
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LD bin list (Phase II) | ||||||||||||||||
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DOI
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10.18908/lsdba.nbdc00036-003 |
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Description of data contents
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LD bin list of D2 (Phase II). LD bin is a group of SNPs that mutually shows high LD (r<sup>2</sup> > 0.8). See below for detail. | ||||||||||||||||
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Data file
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File name :
dhaplo_d2_ld_bin_list.zip
File URL :
File size :
3.0MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/dhaplo_d2_ld_bin_list#en | ||||||||||||||||
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Data acquisition method
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Perlegen 281K arraysăAffymetrix 500K arrays |
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Data analysis method
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Common SNPs (MAF > 5%) were selected, and LDs (r2 values) between every SNP pairs within 300 kb were calculated. LD bins were collected so that every pairs within the bin shows r2 >0.8, by the greedy method of ldSELECT (Carson et al., AJHG 74, 106-120, 2004) after the program was modified so that it can handle haploid data. |
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Number of data entries
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254,762 entries |
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