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Phenotype abnormality

Data description
Data name
Phenotype abnormality
DOI
10.18908/lsdba.nbdc01509-005
Description of data contents
We have collected various kind of phenotypes, including those of morphology, responsibility to environmental factors. They are standardized by combination of ontology terms and properties. Phenotypes for morphology are standardized using Plant Ontology (PO) or Trait Ontology (TO), with Phenotype Ontology (PATO). PATO is the vocabulary covering terms of characcteristics such as "large" and "long". PO and TO are the vocabularies covering names of organs and developmental stages. Phenotypes of biochemical characteristics or stress tolerance can be expressed using Gene Ontology (GO), ChEBI etc. Some phenotypes are observed under some specific environements such as "long-day condition". Such phenotypes have links to environmental factors standardized and listed in another class.
Data file
File name :
cpp_abnormality.zip
File URL :
File size :
12 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/cpp_abnormality#en
Data acquisition method

Plant Ontology, Phenotype Ontology
Data analysis method

-
Number of data entries

488 entries
Data detail
Data item Description
Entry URI

Entry URI
Entry name

Entry name
Experimental condition

Experimental condition
Condition URI

Condition URI
Quality in PATO

Quality (defined in PATO)
In organ named

In organ named
In period of

In period of
In response to organism

In response to organism
In situation of

In situation of
After

After
Under influence of

Under influence of
During process named

During process named
Exhibited by

Exhibited by
For quantity of

For quantity of
For state of

For state of
For trait of

For trait of
Num of phenotype gene

The number of entries where the abnormality is used in "Phenotype-gene"