About This Database

5'-end sequences of budding yeast full-length cDNA clones and quality scores

Data description

Data name

DOI

10.18908/lsdba.nbdc00838-001

Description of data contents

5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method, the sequence quality score generated by the Phred software, and links to SGD, dbEST and UCSC Genome Browser are provided. Links to the SGD are found only in the cDNAs mapped to the genome. Links to dbEST and UCSC Genome Browser are found only in the cDNAs possessing genuine 5'-end. The number of links to SGD is 51,027, the number of links to dbEST and UCSC Genome Browser is 31,847, and the total number of cDNAs is 83,707. The data are given in a CSV format text file.

Data file

File name :

yeast_seq_qual.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/yeast_cdna/LATEST/yeast_seq_qual.zip

File size :

59.9MB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/budding_yeast_cdna_sequencing_project#en

Data acquisition method

Data analysis method

Sequencing, Base call by Phred

Number of data entries

83,706 entries

Data detail

Data item	Description
Clone ID	Clone ID, and name in the SGD.
Link to SGD	Link to SGD (Saccharomyces Genome Database, http://www.yeastgenome.org/) based on the clone ID of the cDNAs mapped to the genome. The link is found in the TogoDB edition, and only Clone ID is found in the archive file.
Link to dbEST	Link to NCBI's dbEST based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only.
Link to UCSC Genome Browser	Link to the UCSC Genome Browser based on accession of the GenBank for the cDNAs possessing genuine 5'-end. The link is found in the TogoDB edition, and the archive file has accession only.
Sequence	5'-end sequence data of budding yeast full-length cDNA clones. FASTA format.
Quality	Phred's quality score