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Data description
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Data name
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AcEST(EST sequences of Adiantum capillus-veneris and their annotation)
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DOI
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10.18908/lsdba.nbdc00839-001
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Description of data contents
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EST sequence of Adiantum capillus-veneris and its annotation (clone ID, library name, Blastx search results, etc.) CSV format text file.
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Data file
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File name :
acest_est.zip
File URL :
File size :
110MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/archive_acest#en
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Data acquisition method
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Capillary sequencer
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Data analysis method
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Functional annotation (Results of blastx search against UniProtKB/Swiss-Prot and UniProtKB/TrEMBL databases)
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Number of data entries
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Adiantum capillus-veneris ESTs: 30,540.
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Data detail
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Data item
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Description
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| Clone id |
Clone ID of EST sequence of Adiantum capillus-veneris. |
| Library |
Library name |
| Length |
Number of bases |
| Definition |
Definition |
| Accession |
DDBJ accession number |
| Tissue type |
Name of the tissue from which the sequence is derived |
| Developmental stage |
Developmental stage |
| Sequence(60) |
Nucleotide sequence (line break after 60 characters) |
| sequence |
Nucleotide sequence (without line break) |
| ||Homology search results|| |
- |
| Swiss-Prot (release 56.9) |
Results of blastx search against Swiss-Prot (release 56.9) |
| UniProt ID of top hit in Swiss-Prot |
UniProt ID of the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9) |
| Definition |
Accession and definition of the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9). Link to Uniprot is provided in TogoDB. |
| Align length |
The alignment length between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9). |
| Score (bit) |
Score (bit) of the alignment between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9). |
| E-value |
E-value of the alignment between the query and the hit sequence with the highest score in the blastx search against Swiss-Prot (release 56.9). |
| Report |
Results of blastx search against the UniProtKB/Swiss-Prot (release 56.9) database. |
| TrEMBL (release 39.9) |
Results of blastx search against TrEMBL (release 39.9) |
| UniProt ID of top hit in TrEMBL |
UniProt ID of the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). |
| Definition |
Accession and definition of the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). Link to Uniprot is provided in TogoDB. |
| Align length |
The alignment length between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). |
| Score (bit) |
Score (bit) of the alignment between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). |
| E-value |
E-value of the alignment between the query and the hit sequence with the highest score in the blastx search against TrEMBL (release 39.9). |
| Report |
Results of blastx search against the UniProtKB/TrEMBL (release 39.9) database. |
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