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Data description
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Data name
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QTL Information Table
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DOI
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10.18908/lsdba.nbdc01234-001
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Description of data contents
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1051 QTLs extracted from 463 reports are recorded as representative QTLs (As of March 31, 2008).
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Data file
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File name :
qtaro_sjis.zip (Shift JIS)
File URL :
File size :
89 KB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/qtaro#en
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Data acquisition method
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5096 QTLs were extracted from 1214 reports previously published.
Reference sources:
- PubMed (http://www.ncbi.nlm.nih.gov/sites/entrez)
- HighWire (http://highwire.stanford.edu/)
- Jstage (http://www.jstage.jst.go.jp/browse/-char/ja)
- the Rice Genetics Newsletter (http://www.gramene.org/newsletters/rice_genetics/).
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Data analysis method
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The positions of these QTLs were estimated from the physical positions of either two flanking markers (the genomic positions of the distal ends of the two markers) or a co-segregated single marker (between the start and end positions on the genome). By screening for redundancy of traits at the same physical positions, representative QTLs were selected.
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Number of data entries
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1,051 entries
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Data detail
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Data item
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Description
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| id |
ID number of QTL |
| QTL/Gene |
Name of QTL |
| Major category |
Major category of quantitative character |
| Category of object character |
Category of object character |
| Character |
Character |
| Marker |
Type of marker |
| No. of marker for position determination |
Number of the markers used for position determination |
| Chr |
Chromosome number |
| Genome start |
QTL start position on the genome |
| Genome end |
QTL end position on the genome |
| Mapping method |
Mapping method |
| Population |
Population of plants |
| No. of plants |
Number of plants |
| LOD |
LOD score |
| Parent A |
Parent A |
| Parent B |
Parent B |
| Direction (Parent) |
Direction (Parent) |
| a) Physical |
Marker of physical mapping |
| b) Fine1; interval |
Flanking marker of fine mapping A |
| b) Fine2; interval |
Flanking marker of fine mapping B |
| b) Fine3; co-segregated |
Co-segregated marker of fine mapping |
| c) Interval1; interval |
Flanking marker of interval mapping A |
| c) Interval2; interval |
Flanking marker of interval mapping B |
| c) Interval3; co-segregated |
Co-segregated marker of interval mapping |
| d) Co-segregated |
Co-segregated marker |
| Explained variance |
Explained variance |
| Additive effect |
Additive effect |
| Year |
Year the reference was published |
| Reference source |
Search method of the reference.Journals were searched within the following websites. - Jsa (Jstage)- Pha (PubMed, HighWire)- RGN (Rice Genetics Newsletter) |
| Reference no. |
Number assigned to the reference serially within each reference source |
| Reference |
Reference |
| Reference location |
URL of the reference |
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