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Life Science Database Archive
ConfC

Data of conformation changes by some binding

Data detail

info Data name Data of conformation changes by some binding
info DOI 
info Description of data contents 

A protein structure pair which ID% (sequence identity) is more than 99%, and Dmax (maximum distance between Cα atoms of superimposed protein structures) is more than 20 Å, is stored.

info Data file 
File name:
confc_all.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/confc/LATEST/confc_all.zip
File size:
14.2 KB
info Simple search URL 
info Data acquisition method 

PDB (Protein Data Bank)

info Data analysis method 

The distance values of φ and ψ between the superimposed protein structures of each residues are calculated, and the Z score of distance is computed.

info Number of data entries 

352 entries

Data itemDescription
confID ID of this table
classID ID including structural change class information
index Record Index
pdbIDA PDB ID compared protein structure A
pdbIDB PDB ID compared protein structure B
pdbChainA PDB chain ID compared protein structure A
pdbChainB PDB chain ID compared protein structure B
confDatafile Link to conformation analysis file (zip)
confClass Binding molecular type
confName Name of binding molecules
dmax Maximum distance between Cα atoms of superimposed protein structures
rmsd RMSD of distance between Cα of superimposed protein structures
identity Protein sequence identity