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Data description
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Data name
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CEL file attachments
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DOI
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10.18908/lsdba.nbdc00954-01-013
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Description of data contents
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This dataset merged seven datasets (CEL file attributes, Cell sample, Cell viability, Individual list, Organ weight, Hematology, and Biochemistry) into one. Each zip file you can download from "Gene expression data", includes the related part of this dataset as a TSV file named "Attributes.tsv".
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Data file
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File name :
Open-tggates_AllAttribute.zip
File URL :
File size :
1.8 MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/open_tggates_attribute#en
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Data acquisition method
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-
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Data analysis method
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-
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Number of data entries
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33,566 entries
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Data detail
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Data item
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Description
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| BARCODE |
Bar-code assigned to each GeneChip in order to indentify. Bar-code matches CEL file name without extension. Data with the value "No ChipData" don't have a corresponding CEL file since the microarray gene expression analysis wasn't performed. |
| ARR_DESIGN |
In the project, HG-U133_Plus_2 was used for human and Rat230_2 was used for rat. |
| EXP_ID |
ID assigned to each test which can be indentified by a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are assigned from #0040. IDs for in vitro tests are assigned from #5000. |
| GROUP_ID |
ID assigned to each group which can be indentified by a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16) |
| INDIVIDUAL_ID |
ID assigned to each individual within a group. IDs are in single digit. |
| ORGAN |
Organ evaluated in tests. Liver or Kidney. |
| MATERIAL_ID |
ID assigned to each tissue section which was used to acquire gene expression data. IDs are in a single letter. |
| COMPOUND_NAME |
Compound name |
| COMPOUND_ABBREVIATION |
Abbreviated compound name |
| COMPOUND_NO |
Number assigned to each compound. Numbers are not in serial order. |
| SPECIES |
Species |
| EXP_TEST_TYPE |
Type of test. In vivo test or in vitro test. |
| SINGLE_REPEAT_TYPE |
Type of in vivo test. Single-dose test or 28-day repeat-dose test. |
| SEX_TYPE |
Gender. Male or Female. |
| STRAIN_TYPE |
Rat strain used with in vivo tests |
| ADMINISTRATION_ROUTE_TYPE |
Administration route |
| ANIMAL_AGE(week) |
Age of animal (weeks). Only rats at 6 weeks of age were used. |
| SACRIFICE_PERIOD |
Sampling time or period. |
| DOSE |
Dose |
| DOSE_UNIT |
Unit of dose |
| DOSE_LEVEL |
Dose level. The ascending order of the levels is Control, Low, Middle, High. |
| Organ Weight |
- |
| TERMINAL_BW(g) |
terminal body weight |
| LIVER(g) |
the weight of the liver |
| KIDNEY_TOTAL(g) |
the total weight of the kidneys |
| KIDNEY_R(g) |
the weight of the right kidney |
| KIDNEY_L(g) |
the weight of the left kidney |
| Hematology |
- |
| RBC(x10_4/ul) |
red blood cell count |
| Hb(g/dL) |
hemoglobin |
| Ht(%) |
hematocrit value |
| MCV(fL) |
mean corpuscular volume |
| MCH(pg) |
mean corpuscular hemoglobin |
| MCHC(%) |
mean corpuscular hemoglobin concentration |
| Ret(%) |
reticulocyte |
| Plat(x10_4/uL) |
platelet count |
| WBC(x10_2/uL) |
white blood cell count |
| Neu(%) |
neutrophil |
| Eos(%) |
eosinophil |
| Bas(%) |
basophil |
| Mono(%) |
monocyte |
| Lym(%) |
lymphocyte |
| PT(s) |
prothrombin time |
| APTT(s) |
activated partial thromboplastin time |
| Fbg(mg/dL) |
fibrinogen |
| Biochemistry |
- |
| ALP(IU/L) |
alkaline phosphatase |
| TC(mg/dL) |
total cholesterol |
| TG(mg/dL) |
triglyceride |
| PL(mg/dL) |
phospholipid |
| TBIL(mg/dL) |
total bilirubin |
| DBIL(mg/dL) |
direct bilirubin |
| GLC(mg/dL) |
glucose |
| BUN(mg/dL) |
blood urea nitrogen |
| CRE(mg/dL) |
creatinine |
| Na(meq/L) |
sodium |
| K(meq/L) |
potassium |
| Cl(meq/L) |
chlorine |
| Ca(mg/dL) |
calcium |
| IP(mg/dL) |
inorganic phosphorus |
| TP(g/dL) |
total protein |
| RALB(g/dL) |
albumin |
| A/G |
albumin globulin ratio |
| AST(IU/L) |
aspartate aminotransferase |
| ALT(IU/L) |
alanine aminotransferase |
| LDH(IU/L) |
lactate dehydrogenase |
| GTP(IU/L) |
γ-glutamyltranspeptidase |
| Cell viability |
- |
| DNA(%) |
Relative survival rate calculated from DNA content. |
| LDH(%) |
Relative survival rate calculated from the activity value of lactate dehydrogenase which is leaked in the culture supernatant. |
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