About This Database

Expression data of each transcript in mutiple tissue

Data description

Data name

DOI

10.18908/lsdba.nbdc02443-002

Description of data contents

This data file contains values of expressions (tpm value) in multiple tissues of Bombyx mori per each transcript.

Data file

File name :

kaiko_transcript_tpm_data.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/kaiko/LATEST/kaiko_transcript_tpm_data.zip

File size :

5.8 MB

Simple search URL

https://togodb.biosciencedbc.jp/togodb/view/kaiko_transcript_tpm_data#en

Data acquisition method

Reference transcriptomic data and raw RNAseq data constructed with the method described in "Metadata of reference transcriptomic data"
Other RNAseq data was downloaded from Sequence Read Archive(SRA): DRA005094, DRA005878, DRA005094.

Data analysis method

Using the above data, estimation of tpm values of each transcript was performed by Kallisto ver0.44.0.

Number of data entries

51,926 entries

Data detail

Data item	Description
ASG1	Anterior silk gland (biological replicate 1)
ASG2	Anterior silk gland (biological replicate 2)
ASG3	Anterior silk gland (biological replicate 3)
MSG_A1	Anterior part of the middle silk gland (biological replicate 1)
MSG_A2	Anterior part of the middle silk gland (biological replicate 2)
MSG_A3	Anterior part of the middle silk gland (biological replicate 3)
MSG_M1	Middle part of the middle silk gland (biological replicate 1)
MSG_M2	Middle part of the middle silk gland (biological replicate 2)
MSG_M3	Middle part of the middle silk gland (biological replicate 3)
MSG_P1	Posterior part of the middle silk gland (biological replicate 1)
MSG_P2	Posterior part of the middle silk gland (biological replicate 2)
MSG_P3	Posterior part of the middle silk gland (biological replicate 3)
PSG1	Posterior silk gland (biological replicate 1)
PSG2	Posterior silk gland (biological replicate 2)
PSG3	Posterior silk gland (biological replicate 3)
MG1	Midgut (biological replicate 1)
MG2	Midgut (biological replicate 2)
MG3	Midgut (biological replicate 3)
FB1	Fat body (biological replicate 1)
FB2	Fat body (biological replicate 2)
FB3	Fat body (biological replicate 3)
MT1	Malpighian tubules (biological replicate 1)
MT2	Malpighian tubules (biological replicate 2)
MT3	Malpighian tubules (biological replicate 3)
TT1	Testis (biological replicate 1)
TT2	Testis (biological replicate 2)
TT3	Testis (biological replicate 3)
OV1	Ovary (biological replicate 1)
OV2	Ovary (biological replicate 2)
OV3	Ovary (biological replicate 3)
BN_FB1	Fat body from SRA (biological replicate 1)
BN_FB2	Fat body from SRA (biological replicate 2)
BN_FB3	Fat body from SRA (biological replicate 3)
BN_MG1	Midgut from SRA (biological replicate 1)
BN_MG2	Midgut from SRA (biological replicate 2)
BN_MG3	Midgut from SRA (biological replicate 3)
BN_MT1	Malpighian tubules from SRA (biological replicate 1)
BN_MT2	Malpighian tubules from SRA (biological replicate 2)
BN_MT3	Malpighian tubules from SRA (biological replicate 3)
BN_SG1	Silk gland from SRA (biological replicate 1)
BN_SG2	Silk gland from SRA (biological replicate 2)
BN_SG3	Silk gland from SRA (biological replicate 3)
BN_TT1	Testis from SRA (biological replicate 1)
BN_TT2	Testis from SRA (biological replicate 2)
BN_TT3	Testis from SRA (biological replicate 3)
target_id	Unique ID allocated to each transcript in reference transcriptomic data