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About This Database

Nuclear-like Seq in mt Genome

Data description
Data name
Nuclear-like Seq in mt Genome
DOI
10.18908/lsdba.nbdc00193-005
Description of data contents
List of sequence fragments in rice mitochondrial genome that showed similarity to nuclear retrotransposon and transposon sequences.
Data file
File name :
rmg_nuclear_like_seq.zip
File URL :
File size :
1 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/rmg_nuclear_like_seq#en
Data acquisition method

"Entire Sequence" data in this database

Data analysis method

Homology searches using BLASTX

Number of data entries

19 entries

Data detail
Data item Description
nuc. position

Position of the sequence fragment in the rice mitochondrial genome

length

Length of the sequence fragment

sense or antisense

Sense or antisense strand
+: sense-: antisense

organism

Source of the most closely related transposon/retrotransposon sequence

kind of element

Transposon or retrotransposon
R: retrotransposonT: transposon

accession

GenBank Accession number of the most closely related transposon/retrotransposon sequence

%

Percentage homology to the most closely related transposon/retrotransposon sequence

definition

Characteristics of the most closely related transposon/retrotransposon sequence