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Silkworm, Bombyx mori, reference transcriptome data
About This Database

Database Description

General information of database
Database name
Silkworm, Bombyx mori, reference transcriptome data
Alternative name
-
DOI
10.18908/lsdba.nbdc02443-000
Version
V1 10.18908/lsdba.nbdc02443-000.V001 -
Creator
Creator Name
Kakeru Yokoi
Creator Affiliation
Institute of Agrobiological Sciences, National Agriculture and Food Research Organization /Research Center for Agricultural Information Technology , National Agriculture and Food Research Organization
Literature Search
Creator Name
Takiuya Tsubota
Creator Affiliation
Institute of Agrobiological Sciences, National Agriculture and Food Research Organization
Literature Search
Creator Name
Jianqiang Sun
Creator Affiliation
Research Center for Agricultural Information Technology , National Agriculture and Food Research Organization
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Creator Name
Akiya Jouraku
Creator Affiliation
Institute of Agrobiological Sciences, National Agriculture and Food Research Organization
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Creator Name
Hideki sezutsu
Creator Affiliation
Institute of Agrobiological Sciences, National Agriculture and Food Research Organization
Literature Search
Creator Name
Hidemasa Bono
Creator Affiliation
Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems
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Contact address
Kakeru Yokoi email:
Database classification

Microarray Data and other Gene Expression Databases
Database classification

Annotation
Organism
Taxonomy Name
Bombyx mori
Taxonomy ID
Database description

The data collection contain Bombyx mori reference transcriptomic data and related data. The reference transcriptomic data was constructed from new reference genome data (Kawamoto et al., 2019, Insect biochemistry and molecular biology ) and RNAseq data of multiple tissues in Bombyx mori P50T strain.
"Metadata of reference transcriptomic data" is gtf file showing position of each transcript in the new reference genome.
"Expression data of each transcript in multiple tissue" is matrix gene expression files showing tpm values of each transcript in multiple tissues.
"Annotations of each transcript" is annotation file showing Blast results of each transcript against human and Drosophila protein data set.
"Predicted amino acid sequences in the reference transcriptomic data" is a multi fasta file of amino acid sequence predicted with from the reference transcriptomic data.
Features and manner of utilization of database

License
CC BY-SA Detail
Background and funding
Grants:"Cross-ministerial Strategic Innovation Promotion Program (SIP)" from Cabinet Office, Japan. "Research Project of the Ministry of Agriculture, Forestry, and Fisheries of Japan" from the Ministry of Agriculture, Forestry, and Fisheries of Japan
Reference(s)
Article title
Reference transcriptome data in silkworm, Bombyx mori
Author name(s)
Kakeru Yokoi, Takuya Tsubota, Jianqiang Sun, Akiya Jouraku, Hideki Sezutsu, Hidemasa Bono
Journal
bioRxiv <a href="https://doi.org/10.1101/805978" target="_blank">https://doi.org/10.1101/805978</a>
Original website information
Database maintenance site
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URL of the original website
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Operation start date
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Last update date
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URL of the portal site
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Whole data download
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Referenced database
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Entry list
Not available
Query search
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Web services
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URL of Web services
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Need for user registration
Not available