General information of database | |||
 Database name | ChIP-Atlas | ||
| Alternative name | - | ||
| DOI | 10.18908/lsdba.nbdc01558-000.V020 | ||
| Version List |
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| Creator | |||
| Contact address | Shinya Oki | ||
| Database classification | Human and other Vertebrate Genomes - Human genome databases, maps and viewers Nucleotide Sequence Databases - Transcriptional regulator sites and transcription factors Genomics Databases (non-vertebrate) - Genome annotation terms, ontologies and nomenclature | ||
| Organism | |||
| Database description | ChIP-Atlas is the database and its web interface to provide the result of analysis processed from the entire ChIP-Seq data archived in Sequence Read Archive. We have curated metadata described by original data submitter to enable further data analysis. See details here: https://github.com/inutano/chip-atlas/wiki | ||
| Features and manner of utilization of database | Users can browse all peaks from published ChIP-Seq data, and the result of target gene analysis and Colocalization analysis. Users also can perform enrichment analysis by querying user data. | ||
| License | CC BY-SA Detail | ||
| Background and funding | - | ||
| Reference(s) | |||
Original website information | |||
| Database maintenance site | Department of Drug Discovery Medicine, Kyoto University Graduate School of Medicine | ||
| URL of the original website | https://chip-atlas.org/ | ||
| Operation start date | 2015/12/01 | ||
| Last update date | 2021/09/21 | ||
| URL of the portal site | - | ||
| Whole data download | https://github.com/inutano/chip-atlas/wiki#downloads_doc | ||
| Referenced database | - | ||
| Entry list | Available | ||
| Query search | Available | ||
| Web services | Not available | ||
| URL of Web services | - | ||
| Need for user registration | Not available | ||
