[Credits][Terms of service]

Life Science Database Archive
MicrobeDB.jp

NCBI

Data detail

info Data name NCBI
info DOI 
info Version 
V2
V1-
info Description of data contents 

The RDF data of several NCBI related data (i.e., BioProject, BioSample, PubMed, and Assembly) which are important to integrate data in MicrobeDB.jp version 2.
Data file (compressed in tar.gzip) consists of 4 directories (see the following table).

info Data file 
File name:
ncbi.tar.gz
File URL:
https://dbarchive.biosciencedbc.jp/data/microbedb/LATEST/ncbi.tar.gz
File size:
79 MB
info Simple search URL -
info Data acquisition method 

The data that are important to integrate data in MicrobeDB.jp version 2 were obtained by parsing XML and TSV format files in NCBI.

info Data analysis method -
info Number of data entries 

14,905,682 triples

Data itemDescription
ncbi/bioproject/ The RDF files of metadata of NCBI BioProject.
ncbi/biosample/ The RDF files of metadata of NCBI BioSample with the annotations of MEO, MSV, and NCBI Taxonomy.
ncbi/pubmed/ The RDF files of metadata of PubMed.
ncbi/assembly/ The RDF files of metadata of Assembly Reports in NCBI Assembly.