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About This Database

NCBI

Data description
Data name
NCBI
DOI
10.18908/lsdba.nbdc01181-009.V002
Description of data contents
The RDF data of several NCBI related data (i.e., BioProject, BioSample, PubMed, and Assembly) which are important to integrate data in MicrobeDB.jp version 2. Data file (compressed in tar.gzip) consists of 4 directories (see the following table).
Data file
File name :
ncbi.tar.gz
File URL :
File size :
79 MB
Simple search URL
-
Data acquisition method

The data that are important to integrate data in MicrobeDB.jp version 2 were obtained by parsing XML and TSV format files in NCBI.

Data analysis method

-

Number of data entries

14,905,682 triples

Data detail
Data item Description
ncbi/bioproject/

The RDF files of metadata of NCBI BioProject.

ncbi/biosample/

The RDF files of metadata of NCBI BioSample with the annotations of MEO, MSV, and NCBI Taxonomy.

ncbi/pubmed/

The RDF files of metadata of PubMed.

ncbi/assembly/

The RDF files of metadata of Assembly Reports in NCBI Assembly.