General information of database | |
 Database name | TMBETA-GENOME |
| Alternative name | Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences |
| DOI | 10.18908/lsdba.nbdc00713-000 |
| Creator | |
| Contact address | Dr. M. MICHAEL GROMIHA |
| Database classification | Protein sequence databases - Protein properties |
| Organism | |
| Database description | TMBETA-GENOME is a database for transmembrane β-barrel proteins in complete genomes. For each genome, calculations with machine learning algorithms and statistical methods have been perfumed and the annotation results are accumulated in the database. |
| Features and manner of utilization of database | Users can download lists of sequences predicted as β-barrel membrane proteins in FASTA format, which can be used for further analysis. The site also provides prediction tools, such as "TMBETA-DISC" and "TMBETA-SVM", which can discriminate transmembrane β-barrel proteins by inputting amino acid sequences. (These tools are not available in the LSDB Archive.) |
| License | CC BY-SA Detail |
| Background and funding | - |
| Reference(s) | |
Original website information | |
| Database maintenance site | National Institute of Advanced Industrial Science and Technology |
| URL of the original website | - |
| Operation start date | - |
| Last update date | - |
| URL of the portal site | http://medals.jp/elist/detail/70.html |
| Whole data download | - |
| Referenced database | NCBI, Ensembl |
| Entry list | Available |
| Query search | Available |
| Web services | Not available |
| URL of Web services | - |
| Need for user registration | Not available |
