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Life Science Database Archive
dbQSNP

Database Description

General information of database

info Database name dbQSNP
info Alternative name Database of SNPs in human genome with allele frequency information
info DOI 
info Creator 
Creator Name:
Kenshi Hayashi*
Creator Affiliation:
Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University (when creating)
Journal Search:
Creator Name:
Tomoko Tahira
Creator Affiliation:
Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University (when creating)
Journal Search:
Creator Name:
Koichiro Higasa
Creator Affiliation:
Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University (when creating)
Journal Search:
info Contact address 

Tomoko Tahira
Kinjo Gakuin University
E-mail: dbqsnp address

info Database classification Human Genes and Diseases - General polymorphism databases
info Organism 
Taxonomy Name:
Homo sapiens
Taxonomy ID:
info Database description 

SNP discovery and determination of their allele frequency in various sample groups using pooled DNA-quantitative fluorescent SSCP analysis

info Features and manner of utilization of database 

Most of SNPs described here were collected around the transcription start sites of many genes, and their allele frequencies were precisely determined by quantitative fluorescent SSCP analysis of pooled DNA constructed using various populations. These data is useful for the determination of genetic background of various quantitative variation of phenotypes of populations.

info License CC BY-SA Detail
info Background and funding 
Name:
"Research Revolution 2002" (RR2002) initiative from the Ministry of Education, Culture, Sports, Science and Technology, Japan.
info Reference(s) 
Article title:
dbQSNP: a database of SNPs in human promoter regions with allele frequency information determined by single-strand conformation
Author name(s):
Tahira T, Baba S, Higasa K, Kukita Y, Suzuki Y, Sugano S, Hayashi K
Journal:
Human Mutation 2005 Aug. 26(2) 69-77
External Links:
 
Article title:
Precise estimation of allele frequencies of single-nucleotide polymorphisms by a quantitative SSCP analysis of pooled DNA.
Author name(s):
Sasaki T, Tahira T, Suzuki A, Higasa K, Kukita Y, Baba S, Hayashi K.
Journal:
Am J Hum Genet. 2001 Jan;68(1):214-8.
External Links:
 
Article title:
Single-stranded conformational polymorphism analysis using automated capillary array electrophoresis apparatuses.
Author name(s):
Baba S, Kukita Y, Higasa K, Tahira T, Hayashi K.
Journal:
Biotechniques. 2003 Apr;34(4):746-50.
External Links:
 
Article title:
Software for machine-independent quantitative interpretation of SSCP in capillary array electrophoresis (QUISCA)
Author name(s):
Higasa K, Kukita Y, Baba S, Hayashi K.
Journal:
Biotechniques. 2002 Dec;33(6):1342-8.
External Links:
 
Article title:
Association of polymorphisms in complement component C3 gene with susceptibility to systemic lupus erythematosus.
Author name(s):
Miyagawa H, Yamai M, Sakaguchi D, Kiyohara C, Tsukamoto H, Kimoto Y, Nakamura T, Lee JH, Tsai CY, Chiang BL, Shimoda T, Harada M, Tahira T, Hayashi K, Horiuchi T.
Journal:
Rheumatology (Oxford). 2008 Feb;47(2):158-64
External Links:
 
Article title:
Estimation of SNP allele frequencies by SSCP analysis of pooled DNA
Author name(s):
Tahira T, Kukita Y, Higasa K, Okazaki Y, Yoshinaga A, Hayashi K
Journal:
Methods in Molecular Biology 578:193-207 (2009)
External Links:
 
Article title:
Optimization of capillary array electrophoresis single-strand conformation polymorphism analysis for routine molecular diagnostics
Author name(s):
Jespersgaard C, Larsen LA, Baba S, Kukita Y, Tahira T, Christiansen M, Vuust J, Hayashi K, Andersen PS
Journal:
Electrophoresis 27: 3816-3822 (2006)
External Links:
 
Article title:
Multicolor post-PCR labeling of DNA fragments with fluorescent dideoxynucleotides.
Author name(s):
Kukita Y, Hayashi K
Journal:
BioTechniques 33: 502-506 (2002)
External Links:
 
Article title:
Hemi-stranded SSCP analysis of single-nucleotide polymorphisms in short sequence-tagged sites.
Author name(s):
Kukita Y, Manago S, Baba S, Hayashi K
Journal:
BioTechniques 33:1118-1121 (2002)
External Links:
 
Article title:
SSCP analysis of point mutations by multicolor capillary electrophoresis.
Author name(s):
Hayashi K, Wenz HM, Inazuka M, Tahira T, Sasaki T, Atha DH
Journal:
Methods in Molecular Biology 163: 109-126 (2001)
External Links:
 
Article title:
Recent enhancements in SSCP.
Author name(s):
Hayashi K
Journal:
Genetic Analysis: Biomolecular Engineering 14: 193-196 (1999)
External Links:
 
Article title:
SSCP analysis of long DNA fragments in low pH gel
Author name(s):
Kukita Y, Tahira T, Sommer SS, Hayashi K
Journal:
Human Mutation 10: 400-407 (1997)
External Links:
 
Article title:
One-tube post-PCR fluorescent labeling of DNA fragments
Author name(s):
Inazuka M, Tahira T, Hayashi K
Journal:
Genome Research 6: 551-557 (1996)
External Links:
 
Article title:
PCR-SSCP: A method for detection of mutations
Author name(s):
Hayashi K
Journal:
Genetic Analsysis: Techniques and Applications 9: 73-79 (1992)
External Links:
 
Article title:
PCR-SSCP: A simple and sensitive method for detection of mutations in the genomic DNA
Author name(s):
Hayashi, K
Journal:
PCR Methods and Applications 1: 34-38 (1991)
External Links:
 
Article title:
Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction
Author name(s):
Orita M, Suzuki Y, Sekiya T, Hayashi K
Journal:
Genomics 5: 874-879 (1989)
External Links:
 

Original website information

info Database maintenance site 


*The original website was terminated.

info URL of the original website (Closed) http://qsnp.gen.kyushu-u.ac.jp/
info Operation start date 2002/10/23
info Last update date 2008/9/22
info URL of the portal site (Closed)
info Whole data download (Closed)
info Referenced database -
info Entry list Not available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Not available