About This Database

Plastid-like Seq in mt Genome

Data description

Data name

DOI

10.18908/lsdba.nbdc00193-004

Description of data contents

List of characteristic features of DNA fragments that were migrated from the plastid genome to the mitochondrial genome. Information on sizes, positions, gene names, homologies and differences for individual fragments is available.

Data file

File name :

rmg_plastid_like_seq.zip

File URL :

https://dbarchive.biosciencedbc.jp/data/rmg/LATEST/rmg_plastid_like_seq.zip

File size :

2 KB

Simple search URL

http://togodb.biosciencedbc.jp/togodb/view/rmg_plastid_like_seq#en

Data acquisition method

"Entire Sequence" data in this database

Data analysis method

Number of data entries

18 entries

Data detail

Data item	Description
Fragment no.	Fragment number
Position in mtDNA	Position in the mitochondrial DNA sequence
Fragment size(nt)	Size of the fragment
Position in ptDNA	Position in the plastid DNA sequence (The position is based on Hiratsuka et al. (1989))
Genes	Genes
Substitution	Number of substitutions in the plastid DNA sequence
Deletion	Number of nucleotide deletions in the plastid DNA sequence (Number of deletion sites is shown in parentheses)
Insertion	Number of nucleotide insertions in the plastid DNA sequence (Number of insertion sites is shown in parentheses)
Homology(%)	Percentage homology to the rice plastid DNA sequence