Budding yeast cDNA sequencing project
About This Database
Database Description
| General information of database | |
Database name
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Budding yeast cDNA sequencing project
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Alternative name
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DOI
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10.18908/lsdba.nbdc00838-000 |
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Creator
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Creator Name
Fumihito Miura
Creator Affiliation
Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo(when creating)
Creator Name
Takashi Ito*
Creator Affiliation
Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo(when creating)
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Contact address
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GSFS - CB-06, Transdisciplinary Sciences, The University of Tokyo 5-1-5 Kashiwanoha, Kashiwa-shi, Chiba-ken 277-8561 Tel: +81-4-7136-3989 FAX: +81-4-7136-3979 E-mail : 
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Database classification
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Genomics Databases (non-vertebrate) - Fungal genome databases |
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Organism
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Database description
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5'-end sequences of full-length cDNA clones generated from the budding yeast full-length cDNA library by the vector-capping method and the sequence quality score generated by the Phred software. |
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Features and manner of utilization of database
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Since the vector-capping method allows to prepare cDNA possessing a genuine 5'-end, mapping the 5'-end sequence to the genome will lead to accurate identification of the transcription start site. |
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License
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CC BY-SA Detail |
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Background and funding
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Name
KAKENHI (Grant-in-Aid for Scientific Research) on Priority Areas "Systems Genomics" from the Ministry of Education, Culture, Sports, Science and Technology of Japan
Name
Institute for Bioinformatics Research and Development, Japan Science and Technology Agency  |
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Reference(s)
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Article title
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.
Author name(s)
Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T.
Journal
Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17846-51.
External Links
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| Original website information | |
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Database maintenance site
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URL of the original website
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http://itolab.med.kyushu-u.ac.jp/GCap/ |
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Operation start date
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2006/11/14 |
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Last update date
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2006/11/14 |
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URL of the portal site
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Whole data download
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http://itolab.med.kyushu-u.ac.jp/GCap/download.html |
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Referenced database
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- |
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Entry list
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Not available |
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Query search
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Not available |
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Web services
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Not available |
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URL of Web services
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- |
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Need for user registration
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Not available |