About This Database

Alignment

Data description

Data name

Alignment

DOI

Description of data contents

Alignment between target and template sequences

Data file

File name :

sahg_alignment.zip

File URL :

File size :

12.0 MB

Simple search URL

Data acquisition method

3D structures was predicted based on the amino acid sequece by our prediction pipeline (Motono et al., Nucleic Acids Research, 2011, 39, D487-D493).

Data analysis method

Number of data entries

46,664 entries

Data detail

Data item	Description
RefSeqID	RefSeq ID
Domain_type	Type of domain structure (apo or holo)
Template	Template protein name
Query_from	Starting amino acid residue number of the aligned region of the target protein.
Query_to	Ending amino acid residue number of the aligned region of the target protein.
Query_alignment	Alignment sequence (query)
Template_from	Starting amino acid residue number of the aligned region of the template protein.
Template_to	Ending amino acid residue number of the aligned region of the template protein.
Template_alignment	Alignment sequence (template)
Alignment_line	Line of alignment
Identity(%)	Sequence identity