Mutant Panel
About This Database
Database Description
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Database name
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Mutant Panel
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Alternative name
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Rice Tos17 Insertion Mutant Database | |||
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DOI
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10.18908/lsdba.nbdc00229-000.V001 |
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Version
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Creator
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Creator Name
Akio Miyao*  
Creator Affiliation
NARO (formerly NIAS)
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Contact address
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miyao affrc.go.jp+81-29-838-6932 Akio Miyao |
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Database classification
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Plant databases - Rice |
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Organism
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Database description
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The Mutant Panel is a database of rice (Nipponbare) Tos17 insertion mutant lines. These lines were created by activation of the endogenous retrotransposon Tos17. This database enables users to search sequences adjacent to the transposon, as well as strain names from the results of PCR screening using a three-dimensional DNA pool. |
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Features and manner of utilization of database
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The Tos17 insertion sites and corresponding phenotypes for each line are organized, allowing for the investigation of the relationship between the disrupted gene caused by the insertion and the resulting phenotype. |
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License
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CC BY-SA Detail | |||
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Background and funding
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-
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Reference(s)
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Article title
Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome
Author name(s)
Akio Miyao, Katsuyuki Tanaka, Kazumasa Murata, Hiromichi Sawaki, Shin Takeda, Kiyomi Abe, Yoriko Shinozuka, Katsura Onosato, Hirohiko Hirochika
Journal
Plant Cell/2003/15(8):1771-1780
External Links
Article title
A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes
Author name(s)
Akio Miyao, Yukimoto Iwasaki, Hidemi Kitano, Jun-Ichi Itoh, Masahiko Maekawa, Kazumasa Murata, Osamu Yatou, Yasuo Nagato, Hirohiko Hirochika
Journal
Plant Mol. Biol./2007/63(5):625-635
External Links
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Database maintenance site
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National Agriculture and Food Research Organization (NARO) |
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URL of the original website
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https://tos.nias.affrc.go.jp/ | |||
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Operation start date
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1997/12/05 | |||
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Last update date
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Active | |||
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URL of the portal site
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Whole data download
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Referenced database
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Entry list
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Not available | |||
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Query search
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Not available | |||
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Web services
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Not available | |||
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URL of Web services
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Need for user registration
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Not available | |||