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Life Science Database Archive
Mutant Panel

Database Description

General information of database

info Database name Mutant Panel
info Alternative name Rice Tos17 Insertion Mutant Database
info DOI 
info Version 
V1-
info Creator 
Creator Name:
Akio Miyao*
Creator Affiliation:
NARO (formerly NIAS)
info Contact address 

miyaoat_markaffrc.go.jp
+81-29-838-6932
Akio Miyao

info Database classification Plant databases - Rice
info Organism 
Taxonomy Name:
Oryza sativa
Taxonomy ID:
info Database description 

The Mutant Panel is a database of rice (Nipponbare) Tos17 insertion mutant lines. These lines were created by activation of the endogenous retrotransposon Tos17. This database enables users to search sequences adjacent to the transposon, as well as strain names from the results of PCR screening using a three-dimensional DNA pool.

info Features and manner of utilization of database 

The Tos17 insertion sites and corresponding phenotypes for each line are organized, allowing for the investigation of the relationship between the disrupted gene caused by the insertion and the resulting phenotype.

info License -
info Background and funding -
info Reference(s) 
Article title:
Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome
Author name(s):
Akio Miyao, Katsuyuki Tanaka, Kazumasa Murata, Hiromichi Sawaki, Shin Takeda, Kiyomi Abe, Yoriko Shinozuka, Katsura Onosato, Hirohiko Hirochika
Journal:
Plant Cell/2003/15(8):1771-1780
External Links:
 
Article title:
A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes
Author name(s):
Akio Miyao, Yukimoto Iwasaki, Hidemi Kitano, Jun-Ichi Itoh, Masahiko Maekawa, Kazumasa Murata, Osamu Yatou, Yasuo Nagato, Hirohiko Hirochika
Journal:
Plant Mol. Biol./2007/63(5):625-635
External Links:
 

Original website information

info Database maintenance site 

National Agriculture and Food Research Organization (NARO)

info URL of the original website 
info Operation start date 1997/12/05
info Last update date Active
info URL of the portal site -
info Whole data download -
info Referenced database -
info Entry list Not available
info Query search Available
info Web services Not available
info URL of Web services -
info Need for user registration Available