[Credits]

Life Science Database Archive
SPD

Soybean transciptome data

Data detail

info Data name Soybean transciptome data
info DOI 
info Description of data contents 

Samples are collected from soybean in different flood conditions and time course. mRNA are sequenced twice with HiCEP(High-Coverage Expression Profiling) method and clusetered.
The graph of 2nd clustering result is in TranscriptProf.pdf.

info Data file 
File name:
soybean_transcript.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/spd/LATEST/soybean_transcript.zip
File size:
1.2 MB
File name:
TranscriptProf.pdf
File URL:
https://dbarchive.biosciencedbc.jp/data/spd/LATEST/TranscriptProf.pdf
File size:
224 KB
info Simple search URL 
info Data acquisition method 

Sequencing with HiCEP(High-Coverage Expression Profiling) method

info Data analysis method 

Clusetering

info Number of data entries 

29,388 entries

Data itemDescription
Primer HiCEP primer set (5' end - 3' end)
Peak No Peak number of DNA sequences identified by sequencer
2(0) Height min Sample: 2 days after seeding, 0 days after flooding
Minimum peak value in sequencing
2(0) Height max Sample: 2 days after seeding, 0 days after flooding
Maximum peak value in sequencing
2.5(0) Height min Sample: 2.5 days after seeding, 0 days after flooding (control)
Minimum peak value in sequencing
2.5(0) Height max Sample: 2.5 days after seeding, 0 days after flooding (control)
Maximum peak value in sequencing
2.5(0.5) Height min Sample: 2.5 days after seeding, 0.5 days after flooding
Minimum peak value in sequencing
2.5(0.5) Height max Sample: 2.5 days after seeding, 0.5 days after flooding
Maximum peak value in sequencing
3(0) Height min Sample: 3 days after seeding, 0 days after flooding (control)
Minimum peak value in sequencing
3(0) Height max Sample: 3 days after seeding, 0 days after flooding (control)
Maximum peak value in sequencing
3(1) Height min Sample: 3 days after seeding, 1 days after flooding
Minimum peak value in sequencing
3(1) Height max Sample: 3 days after seeding, 1 days after flooding
Maximum peak value in sequencing
3.5(0) Height min Sample: 3.5 days after seeding, 0 days after flooding (control)
Minimum peak value in sequencing
3.5(0) Height max Sample: 3.5 days after seeding, 0 days after flooding (control)
Maximum peak value in sequencing
3.5(1.5) Height min Sample: 3.5 days after seeding, 1.5 days after flooding
Minimum peak value in sequencing
3.5(1.5) Height max Sample: 3.5 days after seeding, 1.5 days after flooding
Maximum peak value in sequencing
4(0) Height min Sample: 4 days after seeding, 0 days after flooding (control)
Minimum peak value in sequencing
4(0) Height max Sample: 4 days after seeding, 0 days after flooding (control)
Maximum peak value in sequencing
4(2) Height min Sample: 4 days after seeding, 2 days after flooding
Minimum peak value in sequencing
4(2) Height max Sample: 4 days after seeding, 2 days after flooding
Maximum peak value in sequencing
Size min Minimum molecular weight of DNA in seuquencing
Size max Maximum molecular weight of DNA in seuquencing
1_Cluster_No Cluseter number of 1st clustering (0-31)
2_Cluster_No Cluseter number of 2nd clustering (1-65)
Target records are filtered in the following conditions:
・Classified in "31" of 1st clutering
・max peak / min peak > 3
3_Peak_No Graph number in "Soybean omics data"
Target records are filtered in the following conditions:
・peak value in treated / peak value in control > 20