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About This Database

Expression data

Data description
Data name
Expression data
DOI
10.18908/lsdba.nbdc01557-004
Description of data contents
Normalized expression data derived from experiments.
Data file
File name :
redii_inaho_expression.zip
File URL :
File size :
101 MB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/redii_inaho_expression#en
Data acquisition method

This table contains normalized expression data derived from various experiments hybridized to RED (Rice 9K Array) and ARRAY22K (Rice 22k Array).

Data analysis method

The data were normalized by data processing, including PRIM (processing implementation for microarray) filtering, and ‘sector median’ normalization, performed at each spotting sector on the glass slide to remove uneven sectors. All the expression data are shown as values of the expression ratio.

Number of data entries

7,354,240 entries

Data detail
Data item Description
Microarray

Microarray name
RED : Rice 9k Array used in the RMOS database
ARRAY22K : Rice 22k Array used in the KOME database

Experiment no

Experiment number

Spot ID

Spot ID

Probe no

Probe number

Probe name

Probe name

Expression value

Expression value (log ratio)