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Data description
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Data name
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Protein (Viridiplantae)
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DOI
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10.18908/lsdba.nbdc01194-02-001.V002
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Description of data contents
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Amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database with the NCBI GI numbers, the Reference Sequence IDs, and annotations. The IDs of clusters that the amino acid sequences belong to in each taxon are indicated.
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Data file
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File name :
pgdbj_ortholog_db_viridiplantae_protein.zip
File URL :
File size :
200 MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_viridiplantae_protein#en
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Data acquisition method
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Amino acid sequences obtained from the NCBI Reference Sequence Database.
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Data analysis method
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Organisms that have equal to or greater than 500 amino acid sequences in the NCBI Reference Sequence Database were included.
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Number of data entries
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1,137,698 entries
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Data detail
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Data item
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Description
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| GI number |
NCBI GI number of Amino Acid sequence |
| RefSeq ID |
NCBI Reference Sequence ID |
| Chr |
Chromosome number or genomic ID |
| Start Position |
Start Position |
| Stop Position |
Stop Position |
| Cluster (Kingdom) |
Cluster ID (rank: Kingdom) |
| Cluster (Phylum) |
Cluster ID (rank: Phylum) |
| Cluster (No rank 1) |
Cluster ID (rank: No rank 1) |
| Cluster (No rank 2) |
Cluster ID (rank: No rank 2) |
| Cluster (No rank 3) |
Cluster ID (rank: No rank 3) |
| Cluster (No rank 4) |
Cluster ID (rank: No rank 4) |
| Cluster (No rank 5) |
Cluster ID (rank: No rank 5) |
| Cluster (No rank 6) |
Cluster ID (rank: No rank 6) |
| Cluster (No rank 7) |
Cluster ID (rank: No rank 7) |
| Cluster (No rank 8) |
Cluster ID (rank: No rank 8) |
| Cluster (No rank 9) |
Cluster ID (rank: No rank 9) |
| Cluster (No rank 10) |
Cluster ID (rank: No rank 10) |
| Cluster (Class) |
Cluster ID (rank: Class) |
| Cluster (No rank 11) |
Cluster ID (rank: No rank 11) |
| Cluster (Subclass) |
Cluster ID (rank: Subclass) |
| Cluster (No rank 12) |
Cluster ID (rank: No rank 12) |
| Cluster (Order) |
Cluster ID (rank: Order) |
| Cluster (Family) |
Cluster ID (rank: Family) |
| Cluster (No rank 13) |
Cluster ID (rank: No rank 13) |
| Cluster (Subfamily) |
Cluster ID (rank: Subfamily) |
| Cluster (No rank 14) |
Cluster ID (rank: No rank 14) |
| Cluster (Tribe) |
Cluster ID (rank: Tribe) |
| Cluster (Subtribe) |
Cluster ID (rank: Subtribe) |
| Cluster (Genus) |
Cluster ID (rank: Genus) |
| Cluster (Subgenus) |
Cluster ID (rank: Subgenus) |
| Cluster (Species) |
Cluster ID (rank: Species) |
| Cluster (Subspecies) |
Cluster ID (rank: Subspecies) |
| Cluster (Forma) |
Cluster ID (rank: Forma) |
| Cluster (No rank 15) |
Cluster ID (rank: No rank 15) |
| Annotation |
Annotation of protein |
| Organism |
Organism |
| AA sequence |
Amino acid sequence |
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