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Life Science Database Archive
PGDBj - Ortholog DB

Protein (Viridiplantae)

Data detail

info Data name Protein (Viridiplantae)
info DOI 
info Version 
V2
V1-
info Description of data contents 

Amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database with the NCBI GI numbers, the Reference Sequence IDs, and annotations. The IDs of clusters that the amino acid sequences belong to in each taxon are indicated.

info Data file 
File name:
pgdbj_ortholog_db_viridiplantae_protein.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/pgdbj-ortholog-db/LATEST/pgdbj_ortholog_db_viridiplantae_protein.zip
File size:
200 MB
info Simple search URL 
info Data acquisition method 

Amino acid sequences obtained from the NCBI Reference Sequence Database.

info Data analysis method 

Organisms that have equal to or greater than 500 amino acid sequences in the NCBI Reference Sequence Database were included.

info Number of data entries 

1,137,698 entries

Data itemDescription
GI number NCBI GI number of Amino Acid sequence
RefSeq ID NCBI Reference Sequence ID
Chr Chromosome number or genomic ID
Start Position Start Position
Stop Position Stop Position
Cluster (Kingdom) Cluster ID (rank: Kingdom)
Cluster (Phylum) Cluster ID (rank: Phylum)
Cluster (No rank 1) Cluster ID (rank: No rank 1)
Cluster (No rank 2) Cluster ID (rank: No rank 2)
Cluster (No rank 3) Cluster ID (rank: No rank 3)
Cluster (No rank 4) Cluster ID (rank: No rank 4)
Cluster (No rank 5) Cluster ID (rank: No rank 5)
Cluster (No rank 6) Cluster ID (rank: No rank 6)
Cluster (No rank 7) Cluster ID (rank: No rank 7)
Cluster (No rank 8) Cluster ID (rank: No rank 8)
Cluster (No rank 9) Cluster ID (rank: No rank 9)
Cluster (No rank 10) Cluster ID (rank: No rank 10)
Cluster (Class) Cluster ID (rank: Class)
Cluster (No rank 11) Cluster ID (rank: No rank 11)
Cluster (Subclass) Cluster ID (rank: Subclass)
Cluster (No rank 12) Cluster ID (rank: No rank 12)
Cluster (Order) Cluster ID (rank: Order)
Cluster (Family) Cluster ID (rank: Family)
Cluster (No rank 13) Cluster ID (rank: No rank 13)
Cluster (Subfamily) Cluster ID (rank: Subfamily)
Cluster (No rank 14) Cluster ID (rank: No rank 14)
Cluster (Tribe) Cluster ID (rank: Tribe)
Cluster (Subtribe) Cluster ID (rank: Subtribe)
Cluster (Genus) Cluster ID (rank: Genus)
Cluster (Subgenus) Cluster ID (rank: Subgenus)
Cluster (Species) Cluster ID (rank: Species)
Cluster (Subspecies) Cluster ID (rank: Subspecies)
Cluster (Forma) Cluster ID (rank: Forma)
Cluster (No rank 15) Cluster ID (rank: No rank 15)
Annotation Annotation of protein
Organism Organism
AA sequence Amino acid sequence