About This Database

Sample Annotations

Data description

Data name

Sample Annotations

DOI

Description of data contents

Sample annotations provided by each project. Columns are different in CAGE data and GeneChip data.

Data file

File name :

refex_sample_ann01_cage_human_prjdb1099

File URL :

File size :

27 KB

Simple search URL

Data acquisition method

Provided by each project

Data analysis method

Number of data entries

Data detail

Data item	Description
CAGE	-
FANTOM5 Original Order	Order defined in FANTOM5
Alphabetical Uniq Order by developmental, primary cells	Alphabetical order
RefEx Tissue Class10	ID of each tissue classified in 10 organs.
RefEx Tissue Class40	ID of each tissue classified in 40 organs.
Cell Class	Class of cell based on its property.
Tissue Class	Class of tissue based on its property.
Description (RefEx refined)	Additional information on samples provided by RefEx.
FANTOM5 URL	URL for information on samples provided by FANTOM5.
Description (FANTOM5)	Additional information on samples provided by FANTOM5.
GeneChip	-
Accession	GEO accession of sample
Title	Sample name
Sample Type	Type of sample
Taxonomy	Organism
Channels	The number of kind of fluorescent pigments in Microarray.
Platform	GEO accession of experimental platform
Series	GEO accession of series the sample belongs in.
Supplementary Types	Formats of available raw data file
Supplementary Links	URL for raw data file
SRA Accession	SRA accession
Contact	Contact about data
Release Date	Release date of data