ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501659 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◣ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

GSTA4
MTRNR2L1
PTPRN2
COL23A1
DUX4
MTRNR2L8
KIF5C
EAPP
MUC3A
MTRNR2L2
MSH3
DHFR
EPN1
FXYD3
RGPD1
RGPD2
SIT1
CCDC107
ARHGEF39
SERPINE2
PHC2
RGS19
OPRL1
LKAAEAR1
DDIT4
TMEM107
FRG2
CCDC200
TAF12
WDR74
STX5
NME1-NME2
NME1
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
SIRT4
GTPBP6
STX16
WDR36
NAA80
IFRD2
HYAL3
CALCOCO1
UCKL1
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
TMEM115
NPRL2
CYB561D2
GPBAR1
CALR3
C19orf44
TCEA2
PHB
TESK2
MMACHC
CCDC163
SMPD3
BOD1
CLPB
FEM1A
HDGF
HIKESHI
MRPL24
PAFAH2
ST3GAL2
PNKD
AAMP
GSPT1
AP2S1
ARHGAP35
SLC39A1
CREB3L4
CHMP4B
CRTC2
TSNAXIP1
NUDCD1
RANBP10
FRG2C
BTRC
TMTC3
CEP290
PPRC1
KBTBD6
PANK4
HES5
PEMT
AHCYL2
RPL36
MICOS13
HSD11B1L
DDX23
PRCC
KBTBD7
UNK
H3-3B
PPP1R12C
C1orf159
LARS1
UBE2T
PPP1R12B
INVS
ERP44
CTU1
PHF12
ZNF225
ZFYVE1
VARS2
GTF2H4
VCPIP1
C8orf44-SGK3
RASSF1
TSSC4
ZMYND10
MAD2L1BP
GTPBP2
NTAN1
CHPF2
ABCF2
BANP
SYMPK
FOXA3
ZNF444
TNFAIP1
IFT20
ORMDL3
GSDMB
PYCR3
GFUS
SLC35B4
SCAF1
RRAS
DSTYK
UBQLN4
LAMTOR2
FASTKD1
ZNF513
SNX17
EIF2B4
RPIA
STAU1
INTS9
HMBOX1
SEPTIN9
WDPCP
MDH1
ASIC3
TTC13
ING3
STK25
SLC4A2
CDK5
CCDC146
SUFU
ACTR1A
TTC33
SCRIB
ZFYVE28
CFAP99
ZSCAN22
UNKL
CCP110
GATB
C16orf91
TIMM21
FBXO15
TLE3
EMILIN1
SV2A
ZNF749
KHK
OST4
WNK1
COX7C
SSBP1
MED15
NOP14
GRK4
BOLA1
JOSD2
ASPDH
AP2M1
UBR2
ZFYVE19
DNAJC17
DEXI
CLEC16A
TMEM127
CIAO1
ZNF337
TMEM59
ODF3L2
MADCAM1
MAF1
CYC1
WDR87
SIPA1L3
TSC2
NTHL1
WDR97
TFEB
ZNF56
MIDN
ATP5F1D
PEX14
SIRT2
NFKBIB
RPS7
PHF13
MRI1
C19orf53
CTF1
BCL7C
TRAPPC3
MAP7D1
TOR1AIP2
TOR1AIP1
UBAC1
DFFA
SMARCAL1
BUB1B
DESI2
KMT2B
CBARP
RIC8B
NUF2
VPS50
HEPACAM2
TMEM70
ELOC
RPS2
RNF151
FBXW11
NMT1
DCAKD
ZNF517
ZNF34
RPL8
ZNF189
MRPL50
TFPT
PRPF31
FBXO46
ING4
AURKAIP1
IPPK
TMEM208
LRRC29
RPGRIP1L
FTO
CCDC90B
SESN1
DYNC1I2
BUB3
TBL3
MEIOSIN
PERCC1
HMX2
PSMD11
RPS20
EMP3
CCDC114
RANGAP1
ZNF235
SOX6
C11orf58
USP48
NDUFS2
ADAMTS4
RAB5C
RAB1A
PRRG2
NOSIP
SLC25A19
CAPN15
ATP5PO
THRAP3
LETM1
DCP1A
THYN1
ACAD8
TMEM160
FBXL19
CNIH4
ZNF169
TRAF7
RAB26
LMNB2
ZNF420
NUDT13
PDE6D
COPS7B
OSCAR
NDUFA3
PEX26
CCDC150
TMEM101
FBXO48
APLF
CLP1
CCAR2
C8orf58
ZNF224
B3GALNT2
TRAK2
STRADB
RALBP1
VIPAS39
AHSA1
YPEL4
CHCHD3
RPL18A
LY6G5B
GPANK1
CSNK2B
C6orf47
APOM
ZC3H11A
ZBED6
MARS1
ARHGAP9
PTDSS2
ANO9
RBL1
SNX27
MED23
ENPP3
ZNF140
TTBK1
MON1A
NOXO1
ZNF354A
DDX49
COPE
ZNF350
STK17A
ZNF554
KAT7
MYLK4
RABAC1
GPR15
CLDND1
WBP1
INO80B
ZNF384
FAM193A
RBM6
TMEM102
FGF11
CHRNB1
PANK3
TMEM43
CHCHD4
CTDP1
FAM185A
PA2G4
SPEM3
BIRC5
SMUG1
UFSP2
C4orf47
GPKOW
CCDC174
NFXL1
SERPINI1
PDCD10
CDK5RAP2
HTRA2
DQX1
YPEL3
TBX6
SCAMP4
ADAT3
UBE2Q1
CHRNB2
LOC102724770
DGCR6
SF3A3
UTP11
FHL3
WRNIP1
RPS6KB2
UCHL5
RO60
ZBTB45
ZNF230
SDCCAG8
CEP170
NUP153
ZNF37A
LTA4H
PTPRCAP
FAM222A
CNOT4
ZW10
CLDN25
BICD2
PNPLA6
SPEM2
AKIRIN2
GPAA1
EXOSC4
FAM228B
CALR
CNOT1
ZNF133
TMEM245
UTP3
RPS19
POLR2E
UBL7
ZNF227
PRR22
DUS3L
ZNF527
HBP1
SLMAP
GPX4
RPS3
RTN2
GABARAP
ZCCHC4
SLC33A1
LIN37
INTS1
WBP2
PROSER3
HSPB6
PHF23
DVL2
MRPL20
CCNL2
PKLR
FDPS
SAMD1
MISP3
C19orf67
ZNF226
NDUFS7
SNRPE
SNX1
CIAO2A
PIGU
NKIRAS1
SPHK2
RPL18
FAM83E
PCM1
SYPL1
PSENEN
RALGAPA2
NEK8
HSPA13
MXI1
ZGPAT
ARFRP1
LAMP1
RPS26
NFKBIL1
DDX39B
ATP6V1G2
RPS13
NOP53
SLC27A5
PGBD4
EMC7
SEC61A1
PRR5L
TP53I3
SF3B6
PHB2
CDCA8
C1orf109
TIMM13
COMMD9
LUC7L
FAM234A
ZNF514
ZNF2
SLX1B
SLX1A
BOLA2B
BOLA2
SCRT1
DGAT1
S1PR4
ZNF484
PTBP1
SYNGR4
PIH1D1
ALDH16A1
QTRT2
CCDC191
LRFN3
CFAP410
NCLN
METTL26
WFIKKN1
ZNF32
PRR14
FBRS
WDR53
FBXO45
ZNF547
TRAPPC2B
AHCTF1
MTMR9
SPATC1L
RPP40
CLDN6
PSMD4
TXNDC9
EIF5B
UBALD1
MGRN1
RPL15
ZNF419
SEC11C
TPGS1
NDUFS3
KBTBD4
FAM180B
GALK2
TNFRSF12A
THOC6
HCFC1R1
ZNF500
ZNF772
HEXIM2
MED27
RPL29
TTC1
AQR
CIC
CAND1
ZCCHC8
TMEM69
GPBP1L1
CWC22
PEX12
AP2B1
ENOX2
RAB29
SLC17A7
PES1
FAM207A
SULT1A4
SULT1A3
DNM1L
EIF2D
RNASEH2C
KAT5
ASXL1
RPL23A
ZNF343
RAB34
PROCA1
ZNF26
TLCD1
TMEM186
PMM2
RPL37
CARD6
GINS3
GSK3A
CDK8
ZMYND15
MED11
CXCL16
TERF2
WAPL
FARSA
FAM166A
DBP
OPA1
RCAN1
USP35
KCTD21
ZBTB7A
IGSF8
MAX
ZNF451
RAB30
PSMD2
COPS7A
PPP6C
CCNL1
TMED9
B4GALT7
CA11
TSACC
CCT3
NCBP2AS2
NCBP2
CAPG
RAB13
CWC25
STPG3
UBE2J2
PSMC4
GID4
ATPAF2
DDX47
NOLC1
GPR108
FAM53C
CDC25C
LSG1
EIF1B
ZMAT5
UQCR10
TRIP4
SSR3
PCLAF
UBA52
ILF3
ALG10B
BOLA2-SMG1P6
ZNF768
ZNF747
TMEM262
SSR2
BOD1L1
MUS81
CFL1
VAPA
RBBP5
RPS27
METTL3
SLC38A9
PSMF1
EML6
SCAMP3
FAM189B
HPS6
ARMH3
THAP11
RPS3A
ZSCAN32
ZNF174
L3MBTL2
ADSS2
DOHH
COPS2
KBTBD8
TMEM222
USP31
KANSL1
KCTD5
TRIP10
THAP1
SHC1
LEMD2
PARL
CATSPERE
WASF1
CDC40
TMEM199
SEBOX
POLDIP2
SUGP1
MAU2
GPR137
HIRIP3
EXOC4
ZNF789
ATP5MF-PTCD1
ATP5MF
ABRAXAS2
SELENOH
ZNF805
AURKC
FHIT
RPL27
IFI35
CLPP
MBD1
CXXC1
PRKCI
MTR
EEF1AKMT2
GFM1
ZNF862
ZNF17
TOR2A
PTPN6
C12orf57
ZNF567
AKAP8
PSMD3
MEN1
MAP4K2
VPS4B
CCND3
NCDN
KIAA0319L
RETSAT
CARS1
AMD1
TSN
DPP9
NUTF2
CENPT
ZNF25
POLR2J3
ZNF773
PPP1R13L
POLR1G
ZSWIM9
LIG1
SASS6
ZNF584
ZNF586
C12orf43
SLC50A1
MRPS16
DNAJC9
CSRNP2
ZNF277
DOCK4
NDUFB5
MRPL47
RGL2
PFDN6
RRP15
RPL22
RNF207
RACGAP1
LAT
SKP2
LMBRD2
ESCO2
TOR1A
EIF3C
XPOT
PRKCSH
CCDC151
VMO1
PSMB6
POLRMT
GLTPD2
FGF22
ALG10
VKORC1
WDR46
SH2D3C
EIF3CL
TUT1
MTA2
PSMB4
CAPN10
FBH1
SMN2
SMN1
P2RY11
RXFP4
DPM3
NARS1
DEDD
TRMT1L
SWT1
CCDC124
EIF3D
N4BP2L2
VEZT
FGD6
YJU2
TSNAX
TMEM33
ANKRD16
PRSS53
ZNF684
RAD23A
MRPS23
STMN3
RTEL1
RRP36
MEA1
KLHDC3
EIF2S2
GPT2
ARHGEF1
SERP1
EIF2A
ZNF436
ZNF165
OR1F12
DHX8
CIAO3
CDK9
ERF
SNAPC3
STX18
JRK
ZNF45
FBXL12
NAT14
COPS8
DPH2
B4GALT2
ATP6V0B
ELP6
MAMDC2
C1orf54
SCYL3
CORO1A
VRK1
ZNF605
FZR1
TMEM41A
IPO7
INTS4
KATNB1
CNOT6
RAB3C
SF3B2
GAL3ST3
MRPL54
APBA3
CRK
ZNF628
GGPS1
ARID4B
RAB7A
ZNF101
ATP13A1
IFRD1
FRA10AC1
NUP205
INTS12
GSTCD
ZNF548
LTN1
MRPS18C
HELQ
SKIV2L
NELFE
CCNT2
ZNF764
YIPF2
TIMM29
DTX2
KHDC4
GBA
FBF1
MAMSTR
PUM3
H4C12
KRR1
SFXN5
APH1A
COG2
DARS2
CENPL
NFATC3
ZMPSTE24
TIMM22
ABT1
NSA2
GFM2
RAX2
SPNS1
CANT1
TOMM22
ITPR1
DHX33
BET1
MRPL1
OAZ3
MRPL9
THRA
RFX1
IPO13
KLHL20
RBM28
R3HDM1
RPS5
ZRANB3
SNAPIN
RPL12
LRSAM1
MIA3
WDR45
SNAP47
JMJD4
RWDD1
ZNF599
MORF4L1
ZNF585A
SLC19A1
GEMIN6
ZNF416
ZIK1
BRIX1
SERBP1
H4C11
EIF3F
ZC3H10
RPL41
USP15
SLC39A3
MYBL1
UCK1
FAM168A
NOP16
HIGD2A
ABCC5
SUPT5H
RPS16
PPIP5K2
GIN1
MITF
CNPY2
NMNAT1
LZIC
FLAD1
CKS1B
TLE4
DCAF1
DMAC1
RAD52
RPL34
DNAJC28
MDM4
ZNF180
ZNF691
TMEM109
PRPF19
TMEM79
SMG5
TATDN3
NSL1
MRPL3
ACLY
PARK7
UBE2V1
DNAJC14
TRUB2
COQ4
SLC12A6
ACTRT3
GSC2
SART1
TRABD
FBXO38
WIZ
TRMT2A
RANBP1
WDR24
STUB1
JMJD8
USHBP1
BABAM1
POLD1
NR1H2
RUVBL1
RAD51AP2
ZNF221
RAB8B
TRUB1
UBXN8
EMSY
MED24
ZSCAN5A
TPR
ODR4
ETFDH
C4orf46
TM9SF4
TPRKB
NUP107
SEC13
SH2D6
TMEM94
SH2B1
NUMA1
LRTOMT
SEL1L
SLC39A13
SETDB1
ZNF565
ZNF146
FIS1
TAF8
NFATC2IP
DNM2
PRPF4
CDC26
CEP57L1
TMEM88
NAA38
CYB5D1
REXO2
PRAF2