ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

DUX4
GSTA4
COL23A1
STX16
FRA10AC1
EAPP
MTRNR2L2
MSH3
DHFR
KIF5C
SEMA6A
LIMK1
PHC2
FAM98B
MTRNR2L1
MTRNR2L8
DRG2
NDUFAF1
DCAF10
SMARCD2
GBA
TATDN3
NSL1
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
EXD1
CHP1
HPCAL1
ZNF207
C17orf75
IER3
FLOT1
FAM227B
DTWD1
WDR36
TRPV2
CCDC200
STX18
SLC5A3
MRPS6
DSTYK
TPT1
CDK5RAP1
IST1
ANKRD40
RGPD1
RGPD2
TRIP4
PCLAF
MAN2C1
ZC3HC1
TACO1
INPP5F
ADAMTS9
RAD54L2
BNIP1
PCID2
CUL4A
NUF2
DCP1A
NME1-NME2
NME1
STX3
MTF2
DPY19L4
INTS12
GSTCD
WDR74
STX5
LRRC37A3
AURKAIP1
GTPBP6
SAR1B
TMEM242
H3C13
H2BC18
TAF12
BSPRY
TMEM256
NLGN2
COMMD2
H2BC21
H2AC21
H2AC20
STAT6
ANP32E
RBBP5
FCGR2A
NKIRAS1
RPL15
SLC24A1
INTS14
AP3S2
TPRKB
H4C12
H4C11
H2BC14
H2AC14
SLC25A51
SIRT4
TEFM
TEX46
KDM1A
EIF2D
NDUFS7
TTC4
PLEKHM3
SF3A3
ACOT7
KANK1
CTNNB1
ACBD6
NFE2L2
LRATD2
SPRY4
ZMPSTE24
H2BC15
H2AC15
NDUFS3
KBTBD4
FAM180B
NDUFC2-KCTD14
NDUFC2
PSMD1
TOMM5
MTBP
MRPL13
RAB13
RPS27
H4C3
H1-6
ERCC1
PHLDA1
GTF2H2C
GTF2H2
ATXN7L2
CYB561D1
SIT1
CCDC107
ARHGEF39
NOTCH2NLC
TTC26
PEX3
ADAT2
SLC20A1
SERPINE2
LAMP1
LSM5
AVL9
PIGL
NCOR1
S100A5
S100A4
S100A6
HMGB1
USPL1
POLR3B
RPS6KA1
TMEM107
HEXIM2
MRPL40
HIRA
VPS45
ASB6
RPS6
NMNAT1
LZIC
SMG8
RPL37
CARD6
ZNF827
PIGC
C1orf105
ID1
DDIT4
CCNL1
RBM28
WWOX
XPA
DTX2
RASSF5
PTPRH
MRPL44
ZER1
NR1H3
ACP2
WDR70
NUP155
BHLHE40
TOR1AIP2
TOR1AIP1
PARP16
DNAJC25-GNG10
DNAJC25
ZNF609
FRG2
TUBGCP3
ANAPC5
SNRPE
GRAMD1C
NPM1
ZBTB45
SLC27A5
DRAP1
C11orf68
RPL3
ADNP
JUNB
RRP15
JRK
BTF3
DERA
RPS5
FXYD3
NFATC2IP
USP30
MRPL39
NUFIP2
PDE8A
GFOD2
OPA1
GTF2H2C_2
CBX5
HNRNPA1
RFXANK
BORCS8
SNTB1
FEM1B
FAM228B
TP53I3
SF3B6
KCTD5
ITGB3BP
EFCAB7
COX16
BTG1
MTOR
G3BP1
H4C9
H2BC11
H2AC11
SLC26A2
AARSD1
NSUN4
SELENOH
RPL9
LIAS
TFAP2B
PROB1
EEF1A1
SPATA24
SSBP2
LDAH
LIG4
ABHD13
CLTC
RCOR3
SAAL1
B3GNT7
ARL14EP
SOD2
WTAP
H3-2
P2RY11
EIF3G
POLR2C
DR1
PRKCE
ZNF460
ZNFX1
CPPED1
DUSP7
MRPL21
IGHMBP2
SLC6A15
BCL3
MBTPS2
MRPS23
TEX9
RFX7
RPS20
S100A2
RPS3
PTCD1
CPSF4
OTUD7B
CA5A
SSBP1
TSEN34
MPG
NR4A1
RHBDF1
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
SOX5
TMCO2
SNRPB2
FCRLB
RICTOR
CYP2E1
CDKN2AIPNL
RBM45
PDE11A
MRPL24
ABHD12
AGMO
NNMT
COQ8A
PLXNA1
HEMK1
C3orf18
R3HDM2
INHBC
SNRNP70
BFSP1
PPP6R1
TUBB3
MC1R
LOXL4
ATP5MC2
ERCC6L2
ZSCAN30
S100A14
S100A16
MRPL1
SLC44A1
CGGBP1
C3orf38
MTMR2
ITPRID2
TMEM222
DNAJC14
ACBD3
KCTD3
STAT3
NCSTN
COPA
H4C6
H3C6
H1-3
SH2B3
AMACR
FBXO22
RCAN1
PTPN6
C12orf57
PCIF1
CDCA4
UCHL5
RO60
EEF1AKNMT
SLC1A4
MTAP
PYROXD2
SAGE1
CT45A10
BOD1L1
POLDIP3
STARD13
SEC13
SECISBP2L
NOTCH2NLB
EFCAB2
TYRO3
NDUFA9
AKAP3
TOMM20
PDZD9
MOSMO
KANSL3
FER1L5
ZNF76
SERPINA3
PGBD2
PTPRG
KIF22
WWTR1
MRPL48
MIS12
DERL2
UCN2
PFKFB4
H2BC5
H1-4
TIMP3
ADGRL1
KCNMA1
POLR3F
DZANK1
C16orf89
ALG1
WDR11
RIOK1
CAGE1
CSRP1
MOGS
MRPL53
SQSTM1
RPL32
NAA80
IFRD2
HYAL3
CALCOCO1
UCKL1
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
TMEM115
NPRL2
CYB561D2
GPBAR1
CALR3
C19orf44
TCEA2
PHB
TESK2
MMACHC
CCDC163
SMPD3
BOD1
CLPB
FEM1A
HDGF
HIKESHI
PAFAH2
ST3GAL2
PNKD
AAMP
GSPT1
AP2S1
ARHGAP35
SLC39A1
CREB3L4
CHMP4B
CRTC2
TSNAXIP1
NUDCD1
RANBP10
FRG2C
BTRC
TMTC3
CEP290
PPRC1
KBTBD6
PANK4
HES5
PEMT
AHCYL2
RPL36
MICOS13
HSD11B1L
DDX23
PRCC
KBTBD7
UNK
H3-3B
PPP1R12C
C1orf159
LARS1
UBE2T
PPP1R12B
INVS
ERP44
CTU1
PHF12
ZNF225
ZFYVE1
VARS2
GTF2H4
VCPIP1
C8orf44-SGK3
RASSF1
TSSC4
ZMYND10
MAD2L1BP
GTPBP2
NTAN1
CHPF2
ABCF2
BANP
SYMPK
FOXA3
ZNF444
TNFAIP1
IFT20
ORMDL3
GSDMB
PYCR3
GFUS
SLC35B4
SCAF1
RRAS
UBQLN4
LAMTOR2
FASTKD1
ZNF513
SNX17
EIF2B4
RPIA
STAU1
INTS9
HMBOX1
SEPTIN9
WDPCP
MDH1
ASIC3
TTC13
ING3
STK25
SLC4A2
CDK5
CCDC146
SUFU
ACTR1A
TTC33
SCRIB
ZFYVE28
CFAP99
ZSCAN22
UNKL
CCP110
GATB
C16orf91
TIMM21
FBXO15
TLE3
EMILIN1
SV2A
ZNF749
KHK
OST4
WNK1
COX7C
MED15
NOP14
GRK4
BOLA1
JOSD2
ASPDH
AP2M1
UBR2
ZFYVE19
DNAJC17
DEXI
CLEC16A
TMEM127
CIAO1
ZNF337
TMEM59
ODF3L2
MADCAM1
MAF1
CYC1
WDR87
SIPA1L3
TSC2
NTHL1
WDR97
TFEB
ZNF56
MIDN
ATP5F1D
PEX14
SIRT2
NFKBIB
RPS7
PHF13
MRI1
C19orf53
CTF1
BCL7C
TRAPPC3
MAP7D1
UBAC1
DFFA
SMARCAL1
BUB1B
DESI2
KMT2B
CBARP
RIC8B
VPS50
HEPACAM2
TMEM70
ELOC
RPS2
RNF151
FBXW11
NMT1
DCAKD
ZNF517
ZNF34
RPL8
ZNF189
MRPL50
TFPT
PRPF31
FBXO46
ING4
IPPK
TMEM208
LRRC29
RPGRIP1L
FTO
CCDC90B
SESN1
DYNC1I2
BUB3
TBL3
MEIOSIN
PERCC1
HMX2
PSMD11
EMP3
CCDC114
RANGAP1
ZNF235
SOX6
C11orf58
USP48
NDUFS2
ADAMTS4
RAB5C
RAB1A
PRRG2
NOSIP
SLC25A19
CAPN15
ATP5PO
THRAP3
LETM1
THYN1
ACAD8
TMEM160
FBXL19
CNIH4
ZNF169
TRAF7
RAB26
LMNB2
ZNF420
NUDT13
PDE6D
COPS7B
OSCAR
NDUFA3
PEX26
CCDC150
TMEM101
FBXO48
APLF
CLP1
CCAR2
C8orf58
ZNF224
B3GALNT2
TRAK2
STRADB
RALBP1
VIPAS39
AHSA1
YPEL4
CHCHD3
RPL18A
LY6G5B
GPANK1
CSNK2B
C6orf47
APOM
ZC3H11A
ZBED6
MARS1
ARHGAP9
PTDSS2
ANO9
RBL1
SNX27
MED23
ENPP3
ZNF140
TTBK1
MON1A
NOXO1
ZNF354A
DDX49
COPE
ZNF350
STK17A
ZNF554
KAT7
MYLK4
RABAC1
GPR15
CLDND1
WBP1
INO80B
ZNF384
FAM193A
RBM6
TMEM102
FGF11
CHRNB1
PANK3
TMEM43
CHCHD4
CTDP1
FAM185A
PA2G4
SPEM3
BIRC5
SMUG1
UFSP2
C4orf47
GPKOW
CCDC174
NFXL1
SERPINI1
PDCD10
CDK5RAP2
HTRA2
DQX1
YPEL3
TBX6
SCAMP4
ADAT3
UBE2Q1
CHRNB2
LOC102724770
DGCR6
UTP11
FHL3
WRNIP1
RPS6KB2
ZNF230
SDCCAG8
CEP170
NUP153
ZNF37A
LTA4H
PTPRCAP
FAM222A
CNOT4
ZW10
CLDN25
BICD2
PNPLA6
SPEM2
AKIRIN2
GPAA1
EXOSC4
CALR
CNOT1
ZNF133
TMEM245
UTP3
RPS19
POLR2E
UBL7
ZNF227
PRR22
DUS3L
ZNF527
HBP1
SLMAP
GPX4
RTN2
GABARAP
ZCCHC4
SLC33A1
LIN37
INTS1
WBP2
PROSER3
HSPB6
PHF23
DVL2
MRPL20
CCNL2
PKLR
FDPS
SAMD1
MISP3
C19orf67
ZNF226
SNX1
CIAO2A
PIGU
SPHK2
RPL18
FAM83E
PCM1
SYPL1
PSENEN
RALGAPA2
NEK8
HSPA13
MXI1
ZGPAT
ARFRP1
RPS26
NFKBIL1
DDX39B
ATP6V1G2
RPS13
NOP53
PGBD4
EMC7
SEC61A1
PRR5L
PHB2
CDCA8
C1orf109
TIMM13
COMMD9
LUC7L
FAM234A
ZNF514
ZNF2
SLX1B
SLX1A
BOLA2B
BOLA2
SCRT1
DGAT1
S1PR4
ZNF484
PTBP1
SYNGR4
PIH1D1
ALDH16A1
QTRT2
CCDC191
LRFN3
CFAP410
NCLN
METTL26
WFIKKN1
ZNF32
PRR14
FBRS
WDR53
FBXO45
ZNF547
TRAPPC2B
AHCTF1
MTMR9
SPATC1L
RPP40
CLDN6
PSMD4
TXNDC9
EIF5B
UBALD1
MGRN1
ZNF419
SEC11C
TPGS1
GALK2
TNFRSF12A
THOC6
HCFC1R1
ZNF500
ZNF772
MED27
RPL29
TTC1
AQR
CIC
CAND1
ZCCHC8
TMEM69
GPBP1L1
CWC22
PEX12
AP2B1
ENOX2
RAB29
SLC17A7
PES1
FAM207A
SULT1A4
SULT1A3
DNM1L
RNASEH2C
KAT5
ASXL1
RPL23A
ZNF343
RAB34
PROCA1
ZNF26
TLCD1
TMEM186
PMM2
GINS3
GSK3A
CDK8
ZMYND15
MED11
CXCL16
TERF2
WAPL
FARSA
FAM166A
DBP
USP35
KCTD21
ZBTB7A
IGSF8
MAX
ZNF451
RAB30
PSMD2
COPS7A
PPP6C
TMED9
B4GALT7
CA11
TSACC
CCT3
NCBP2AS2
NCBP2
CAPG
CWC25
STPG3
UBE2J2
PSMC4
GID4
ATPAF2
DDX47
NOLC1
GPR108
FAM53C
CDC25C
LSG1
EIF1B
ZMAT5
UQCR10
SSR3
UBA52
ILF3
ALG10B
BOLA2-SMG1P6
ZNF768
ZNF747
TMEM262
SSR2
MUS81
CFL1
VAPA
METTL3
SLC38A9
PSMF1
EML6
SCAMP3
FAM189B
HPS6
ARMH3
THAP11
RPS3A
ZSCAN32
ZNF174
L3MBTL2
ADSS2
DOHH
COPS2
KBTBD8
USP31
KANSL1
TRIP10
THAP1
SHC1
LEMD2
PARL
CATSPERE
WASF1
CDC40
TMEM199
SEBOX
POLDIP2
SUGP1
MAU2
GPR137
HIRIP3
EXOC4
ZNF789
ATP5MF-PTCD1
ATP5MF
ABRAXAS2
ZNF805
AURKC
FHIT
RPL27