ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX447603 | MM.1S
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◣ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

TMEM115
NPRL2
CYB561D2
TCEA2
NAA80
IFRD2
HYAL3
CLPB
ST3GAL2
UCKL1
PANK4
HES5
AP2S1
ARHGAP35
BOD1
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
SLC39A1
CREB3L4
CRTC2
CALCOCO1
FEM1A
DDX23
HDGF
MRPL24
GPBAR1
PNKD
AAMP
AHCYL2
ORMDL3
GSDMB
HIKESHI
TSNAXIP1
RANBP10
CALR3
C19orf44
PAFAH2
GSPT1
UNK
H3-3B
PHB
PRCC
TMTC3
CEP290
SMPD3
CHMP4B
UBE2T
PPP1R12B
PHF12
UBQLN4
LAMTOR2
TTC33
PPRC1
C1orf159
MIDN
ATP5F1D
CBARP
TESK2
MMACHC
CCDC163
PYCR3
GFUS
LARS1
SV2A
BOLA1
CTF1
BCL7C
CCP110
RPL36
MICOS13
HSD11B1L
RASSF1
ZMYND10
NOP14
GRK4
INVS
ERP44
USP48
SYMPK
FOXA3
PEMT
DYNC1I2
SCRIB
BTRC
MED15
ZFYVE28
CFAP99
FASTKD1
TFEB
MAD2L1BP
GTPBP2
SMARCAL1
TSSC4
UBAC1
ODF3L2
MADCAM1
ZNF513
SNX17
EIF2B4
AP2M1
TSC2
NTHL1
FBXL19
SCAF1
RRAS
TNFAIP1
IFT20
WNK1
ZSCAN22
NTAN1
VARS2
GTF2H4
ZNF225
TTC13
WDPCP
MDH1
ZNF749
VCPIP1
C8orf44-SGK3
MRI1
C19orf53
DEXI
CLEC16A
TFPT
PRPF31
TOR1AIP2
TOR1AIP1
ZNF517
ZNF34
RPL8
BUB1B
NUDCD1
RPIA
CHPF2
ABCF2
SIRT2
NFKBIB
NUDT13
ASIC3
SLC4A2
CDK5
KMT2B
BANP
UNKL
C16orf91
STAU1
INTS9
HMBOX1
ZFYVE19
DNAJC17
KBTBD6
ING3
DSTYK
WDR87
SIPA1L3
PPP1R12C
TRAPPC3
MAP7D1
TMEM70
ELOC
COX7C
PEX14
DFFA
CTU1
ZFYVE1
PNPLA6
KBTBD7
ZNF444
GATB
CCDC90B
TMEM59
NMT1
DCAKD
EMP3
CCDC114
LETM1
STK25
CCDC146
RABAC1
ZNF554
YPEL3
TBX6
CNIH4
SNX27
ZNF224
TTBK1
TMEM127
CIAO1
SDCCAG8
CEP170
ZNF235
RAB29
DDX49
COPE
CAPN15
ZNF337
TIMM21
FBXO15
LMNB2
JOSD2
ASPDH
PHF13
ZNF56
SLC35B4
TLE3
DESI2
ZNF169
TPGS1
BUB3
HMX2
FBXW11
HTRA2
DQX1
RIC8B
ZNF420
PDE6D
COPS7B
TIMM13
ZC3H11A
ZBED6
ZNF189
MRPL50
PSMD11
MYLK4
WRNIP1
TMEM102
FGF11
CHRNB1
PANK3
SPEM3
SPEM2
CLP1
YPEL4
SYNGR4
TRAF7
RAB26
UBR2
MXI1
MAF1
CYC1
WDR97
B3GALNT2
SERPINI1
PDCD10
GPR108
TRIP10
RGL2
PFDN6
WDR46
RTN2
PPP1R13L
POLR1G
SLMAP
CWC22
VPS50
HEPACAM2
CLDN6
TNFRSF12A
THOC6
HCFC1R1
TMEM43
CHCHD4
AHCTF1
GPT2
UFSP2
C4orf47
EMILIN1
KHK
OST4
ZNF419
ZNF772
CCDC150
PTDSS2
ANO9
PIH1D1
ALDH16A1
SLC17A7
THRAP3
FAM193A
DBP
CA11
SOX6
C11orf58
NCDN
KIAA0319L
TMEM208
LRRC29
RALBP1
ING4
CNOT1
TMEM69
GPBP1L1
TMEM88
NAA38
CYB5D1
GINS3
TMEM160
RANGAP1
TRAK2
STRADB
RPGRIP1L
FTO
LTA4H
S1PR4
NCLN
ZNF527
PTBP1
ZNF32
MED27
IFRD1
TMEM101
MUS81
CFL1
PEX26
FBXO48
APLF
PRR14
FBRS
ZNF37A
SUFU
ACTR1A
RPP40
ZMYND15
MED11
CXCL16
LY6G5B
GPANK1
CSNK2B
C6orf47
APOM
WIZ
RPS6KB2
PTPRCAP
LUC7L
FAM234A
SMUG1
TMEM245
SCAMP4
ADAT3
VIPAS39
AHSA1
ZNF354A
ZNF768
ZNF747
SSBP1
PPP6C
OSCAR
NDUFA3
RALGAPA2
USP31
CDK5RAP2
RNASEH2C
KAT5
LIN37
PROSER3
HSPB6
PSENEN
ZBTB7A
PSMD4
RBL1
GSK3A
ERF
CTDP1
RPS3
USP35
KCTD21
NFXL1
RAB1A
ZNF384
FHIT
HSP90B1
TXNDC9
EIF5B
AURKAIP1
CDCA8
C1orf109
VEZT
FGD6
RPL18A
ZNF230
NDUFS2
ADAMTS4
FAM185A
MON1A
RBM6
SLC25A19
ZNF25
VAPA
MARS1
ARHGAP9
SLC50A1
DPM3
UBALD1
MGRN1
ZNF133
PSMD2
PRRG2
NOSIP
WASF1
CDC40
CAND1
ZNF140
CCDC174
CARS1
WBP1
INO80B
LEMD2
QTRT2
CCDC191
THAP4
ATG4B
DDX47
SEC11C
MACC1
PKLR
FDPS
WDR53
FBXO45
PA2G4
ZNF350
GPKOW
ZW10
CLDN25
IZUMO1
FUT1
RASIP1
POLR2E
GPX4
ZNF227
MITF
BIRC5
TMED9
B4GALT7
FBXO46
MEIOSIN
SNX1
CIAO2A
CRK
RPS20
AKIRIN2
BICD2
CMPK1
WAPL
METTL26
WFIKKN1
GABARAP
PHF23
DVL2
MYBL1
CNOT4
CWC25
STK17A
CNPY2
PSMB4
MPI
PRR5L
COMMD9
GPR15
CLDND1
FAM222A
CAPN10
THRA
MED24
MORF4L1
PES1
SSR2
KATNB1
NFKBIL1
DDX39B
ATP6V1G2
PCM1
NUP153
PIGU
RPS26
RPS7
CHCHD6
SPC25
UBE2Q1
CHRNB2
ZNF277
DOCK4
LSG1
MAMSTR
ATP5PO
LRFN3
GGPS1
ARID4B
GALM
CHCHD3
RAB3C
ZNF514
ZNF2
WBP2
TLE4
IPPK
CCNL1
NUP205
PSMC4
THAP11
NUTF2
CENPT
EML6
HPS6
ARMH3
ASXL1
FAM53C
CDC25C
ZMAT5
UQCR10
KCNC3
THYN1
ACAD8
RAB30
NUF2
GPAA1
EXOSC4
NFKB2
MED23
ENPP3
NDUFS7
UBL7
ZNF436
UQCRH
LRRC41
RBM41
ZNF862
POLRMT
FGF22
ILF3
PGBD4
EMC7
GSC2
NR1H3
ACP2
DNM1L
SLC37A3
RAB19
TMEM262
HIRIP3
ZNF343
MAX
BDP1
DCP1A
GID4
ATPAF2
RAB8B
ZCCHC8
ZNF530
PHF21A
SMIM13
ZNF451
PRKCSH
CCDC151
ZNF45
UTP11
FHL3
SAMD1
MISP3
C19orf67
EIF2S2
ZNF165
OR1F12
TINF2
GMPR2
NEDD8-MDP1
NEDD8
ATG4C
SF3A3
TRABD
ZNF155
SPHK2
RPL18
FAM83E
ZNF584
DLG4
ACADVL
ZNF500
CLPP
MTR
R3HDM1
ZRANB3
PPP2R5B
ATG2A
KAT7
ZNF789
ATP5MF-PTCD1
ATP5MF
NPL
SCRT1
DGAT1
ABCC5
NOP53
ADSS2
CATSPERE
NAT14
ZNF628
ZNF26
EIF1B
NKIRAS1
ZNF484
RPL15
MBD1
CXXC1
TMEM33
HSPH1
MRPL54
APBA3
IGSF8
ZNF17
OLFML2A
NR6A1
NEK8
RPL23A
RAB34
PROCA1
TLCD1
TRUB1
TERF2
SCYL3
RETSAT
DCAF1
CEP97
HSPA13
USHBP1
BABAM1
ACP6
TIMM22
FAM168A
FBXL18
DHX33
HBP1
RBBP5
NARS1
DARS2
CENPL
SEPTIN9
FAM228B
TP53I3
SF3B6
YWHAG
UCK1
ZNF226
RAB13
RPS27
PRR22
DUS3L
ZNF567
FBF1
DNAJC28
BIVM-ERCC5
POGLUT2
BIVM
TTC24
IQGAP3
TOR2A
EXOC4
GPR137
ZNF605
ZBTB45
SLC27A5
DEDD
SLX1B
SLX1A
BOLA2B
BOLA2
SULT1A4
SULT1A3
BOLA2-SMG1P6
TMEM109
PRPF19
TTC1
UBA1
DYNC2LI1
PIP5KL1
DPM2
UFD1
CDC45
DPH2
B4GALT2
ATP6V0B
TM9SF4
SESN1
CEP57L1
KNSTRN
ZNF586
ZNF268
KBTBD8
SLC38A9
USP39
C2orf68
RNF181
TMEM150A
REXO2
ZNF764
OPA1
ACLY
SUGP1
MAU2
RAB5C
INTS1
CCDC124
ATE1
TSNAX
SAP30
DERL1
HDAC8
ZNF180
ZNF417
CNOT6
RPS19
SSR3
NDUFS3
KBTBD4
FAM180B
TSACC
CCT3
RAX2
ZCCHC4
ETFDH
C4orf46
FGF21
SEC61A1
GEMIN6
PPP1R7
PASK
ZNF805
AURKC
SYPL1
TRMT1L
SWT1
IPO7
LMTK3
SKP2
LMBRD2
SETMAR
BET1
CDK8
ZNF221
KPTN
CIZ1
DNM1
FAM207A
FIS1
CLDN15
OAZ3
MRPL9
SLC39A13
GTF2I
CIC
PNKP
AKT1S1
TBC1D17
ZNF585A
PUS3
DDX25
ITPR1
ZNF599
PEAK1
HMG20A
L3MBTL2
SH2D3C
CDK9
ZNF565
ZNF146
NDUFB5
MRPL47
ZNF776
ZBTB7B
CCND3
TAF8
CSRNP2
SHPK
CTNS
EIF2D
THAP1
ZSCAN5A
LCORL
M6PR
KLRG1
JTB
TULP2
NUCB1
TP73
WRAP73
WDTC1
ZNF317
TSN
SNX16
TLE1
RPS2
RNF151
NDUFB10
RPL3L
CCDC59
RNASEH2A
PRDX2
TMEM94
ZNFX1
ZNF547
TRAPPC2B
DMAC1
XPOT
VAMP7
ENOX2
UBXN8
PHLPP1
ZNF774
SHLD1
POLR1B
RRM1
NAPB
ZNF550
ZNF571
ZNF540
MRPL20
CCNL2
PABPC1
TRIM23
TRAPPC13
SHLD3
NCBP2AS2
NCBP2
VMO1
PSMB6
GLTPD2
TSNARE1
PHB2
PSMA2
MRPL32
RBL2
PNISR
PPIB
ZNF773
NCOA3
ZNF688
SLC33A1
ZNF274
LRPAP1
ZSWIM9
LIG1
FBXO9
CILK1
ABLIM2
CMAS
PLEKHA4
UBE2V1
KIF15
KIAA1143
TPR
ODR4
ZNF324B
ABRAXAS2
EEF1AKMT2
ZNF446
ZNF324
GDAP1
TRUB2
COQ4
TCTEX1D4
BTBD19
AHCY
MRPS22
RPLP2
PNPLA2
PIDD1
KLHL24
KCTD5
WDR45
PRAF2
NUP107
FTL
TMEM41A
PPIL2
SSNA1
ANAPC2
RRP36
MEA1
KLHDC3
EMSY
ZNF211
BCORL1
SNRPB2
CANT1
WRAP53
TP53
OSBPL11
CALCOCO2
CFAP410
SFXN5
RPL12
LRSAM1
R3HCC1L
CCAR2
C8orf58
METTL3
PRKCI
BCKDK
KAT8
ZNF582
HEXIM2
FAM149B1
ECD
BLOC1S5
LRWD1
ALKBH4
MZF1
TOR1A
SEL1L
RAC3
LRRC45
CENPX
SNAPIN
WASHC3
RACGAP1
C1orf54
APH1A
TTLL11
CC2D1A
C19orf57
WDR18
CASTOR2
STMN3
RTEL1
ADO
C12orf43
JRK
AMN1
CUEDC2
SPDYE14
SPDYE10P
SPECC1
ZGPAT
ARFRP1
VPS4B
PGM2L1
ZNF394
ZKSCAN5
WASHC4
CIAO3
MEN1
MAP4K2
ZNF354C
AMMECR1L
AQR
FAM193B
MYL6B
MYL6
ATG9B
ABCB8
SPEGNB
GMPPA
PTCD3
POLR1A
LAT
SPNS1
SEC13
TMEM230
PCNA
PAK2
SF3B2
GAL3ST3
SYT5
DMAP1
DENND1A
MTRF1
CEP128
UBE2N
SMIM30
MRPL19
STX18
RAD51AP2
PDIA5
SELENOH
COPS8
POLD1
NR1H2
GRIN2D
RCAN1
STRN
NOP16
HIGD2A
WDR24
STUB1
JMJD8
GFM1
ZNF573
CLINT1
CCNT2
UBE2D1
TFAP4
EXOC6B
RPL29
PEX12
AP2B1
CPEB4
NOLC1
ZNF24
CCDC117