ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

PHC2
EAPP
EXD1
CHP1
LIMK1
SEMA6A
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
DPY19L4
STX16
FAM98B
KIF5C
STX18
DUX4
DDIT4
MTRNR2L2
MSH3
DHFR
IST1
MRPL21
IGHMBP2
H4C12
H4C11
H2BC15
H2AC15
H2BC14
H2AC14
SAR1B
GSTA4
NUF2
GBA
AAR2
FRA10AC1
TAF12
NR1H3
ACP2
TUBGCP3
ZNF207
C17orf75
SMARCD2
SLC44A1
H3C13
H2BC18
NME1-NME2
NME1
UCHL5
RO60
SF3A3
FEM1B
DMAP1
MTRNR2L1
H3C4
H2AC7
H4C5
H2BC7
TPRKB
RAD54L2
WDR74
STX5
GALK2
RCAN1
COPS2
CCDC200
TRPV2
JRK
GTF3C3
C2orf66
SLC20A1
PHLDA1
RRP15
RASSF5
H1-2
H3C3
H2BC3
RBBP5
SNAP47
JMJD4
MTRNR2L8
RARS1
EIF1AD
CST6
BANF1
NPAS4
TMEM107
DSTYK
TBC1D19
VWA8
RPL37
CARD6
DCAF10
ATR
NAA80
IFRD2
HYAL3
H2BC5
H1-4
AP3S2
IER3
FLOT1
TATDN3
NSL1
EIF2D
H4C4
H2BC6
S100A14
S100A16
MRPL16
TOP3B
CDKN2AIPNL
NDUFB7
SELENOH
ACOT7
RPS7
RPTOR
STX3
BSPRY
USP30
CDK5RAP1
RAB5IF
MAN2C1
KMT2C
TRIB3
NDUFAF1
TSEN15
DHRS3
TNFAIP8L2
TMOD4
SCNM1
LYSMD1
NDUFA12
TRIP4
PCLAF
OGT
HPCAL1
BFSP1
DCP1A
ZSCAN30
FCGR2A
NTSR1
PCID2
CUL4A
H2BC21
H2AC21
H2AC20
SIRT4
TDG
C12orf73
CSRNP1
GTF2H2C_2
GTF2H2C
SPOP
KLHL20
DRG2
YWHAE
STAT3
RPS6
EIF1
SPRY4
SNRPB2
E2F6
SSBP1
CLUAP1
C16orf90
LAMP1
COMMD2
S100A2
VIRMA
TACO1
YARS1
S100PBP
TEFM
UCKL1
WDR36
HEXA
BNIP1
C11orf49
METTL9
ZNF212
IRS2
GSTP1
SLC24A1
INTS14
TRIAP1
COX6A1
PEX3
ADAT2
SLC27A1
MTF2
LRRC47
MANBAL
NDUFS3
KBTBD4
FAM180B
ZNFX1
PARP16
JUNB
WNK4
VPS25
AP3B1
WDR24
STUB1
JMJD8
HMGB1
USPL1
EEF1A1
VANGL2
ST3GAL2
TMA16
LARS2
PLEKHM3
KANSL3
FER1L5
TEKT2
ADPRS
PROB1
DPY19L3
SPATA24
H4C2
H3C2
H2AC4
ADNP
RTN4
WWP2
INTS12
GSTCD
MRPL44
COL23A1
IFI16
PYDC5
PYGB
ALG10B
SPATA25
NEURL2
CTSA
ZSWIM1
TMEM101
P2RY11
EIF3G
ADPRHL1
STAT6
TM9SF1
IPO4
FBXW2
UNG
ALKBH2
GTF2H2
GAB2
GPRC5A
PDE6A
CCNL1
PSMF1
RPL32
DMXL1
TMEM256
NLGN2
MRPS23
KIF2C
CHD2
TSPYL5
CD22
AP5S1
NECAP2
CRTC1
ZNF513
SNX17
EIF2B4
ZCCHC24
ADAMTS9
DNAJC25-GNG10
DNAJC25
TOR1AIP2
TOR1AIP1
CD109
DDX1
DNAJC24
DCDC1
S1PR2
TVP23B
DPP9
MRPL3
SNRPB
KIAA0895L
EXOC3L1
E2F4
NOC4L
DDX51
ELMO3
ARIH1
SNAI1
CCND1
TMEM262
PMPCA
ENTR1
TTPAL
VWA5A
IL24
DDX23
NDUFS7
DMAC1
TMEM242
SLC3A2
ACBD6
CTSC
ZNF391
AGMO
PAFAH2
RPS2
RNF151
TBL3
NOXO1
NFXL1
H4C6
H3C6
H1-3
GGNBP2
WDR11
RTF2
H4C7
H3C7
HTR5A
ALG10
ARHGEF12
RPS5
SLC50A1
SREK1IP1
CWC27
SSBP2
NDUFC2-KCTD14
NDUFC2
EFNA1
RBM28
RAB18
B3GNT7
AURKAIP1
STMN3
RTEL1
TPR
ODR4
NCBP3
ATF3
ANKRD18B
PRRC2B
DUSP7
CASC3
TRUB2
COQ4
ZC3H6
RCOR3
RPS8
POGZ
TUBB1
NDUFB10
RPL3L
NOTCH2NLC
DPH7
PUS7
RINT1
INO80C
ITGA3
ZNF827
SDC4
KBTBD6
TRIB1
INTS5
GANAB
RPL26
KRBA2
GMEB2
SERPINA3
INTS1
DIAPH1
DRAP1
C11orf68
SIT1
CCNC
COX16
TEX46
KDM1A
CCDC107
ARHGEF39
IL21R
IQSEC3
CHD1L
PRKAB2
ZNF830
CCT6B
RACK1
RAB7B
KCNMA1
PIP5KL1
DPM2
SRFBP1
LRRC37A3
TESK1
ZBTB45
SLC27A5
MTAP
SLC33A1
DPP8
SH3GL1
CHAF1A
EDC4
ODC1
RAP1GAP
ZMPSTE24
ZSCAN25
DUS1L
MTERF1
PRKCE
FZD1
AVEN
MNAT1
CPLX2
GRAP2
CDC73
RRN3
THAP5
DNAJB9
CHI3L2
UCN2
PFKFB4
MUS81
CFL1
STAT1
H2AX
DPAGT1
SLC25A51
RBM45
PDE11A
HMBS
SCARF1
RILP
COG2
RGPD1
RGPD2
FAM227B
DTWD1
UQCC1
UFSP1
ACHE
MED23
ENPP3
TTC4
SEC16B
BAGE
BAGE4
BAGE3
GTF2I
C10orf88
RFXANK
BORCS8
DHX8
DUS2
DPEP2NB
DDX28
GOSR1
ANP32E
KNL1
TAF1C
ADAD2
PRADC1
CCT7
MRPL58
ZSCAN10
ZNF205
H2BC8
H2AC8
PRRG2
NOSIP
PSMD6
OTUD7B
CSNK1D
RCC1
ATXN2
H3C10
H2BC13
H2AC13
TTC33
WNK1
ZNF789
ATP5MF-PTCD1
ATP5MF
TRPC4AP
RPL11
KMT2D
ITGB3BP
EFCAB7
RHEBL1
NOB1
METTL15
KIF18A
RNF10
COQ5
WWTR1
LOC283710
CFAP298-TCP10L
CFAP298
NOC3L
SUPT5H
RPS16
MACC1
H4C3
H1-6
TRIM65
MRPL38
FAM133B
WWOX
SRA1
SLC35A4
APBB3
BCL9
EIF4EBP3
BHLHE40
BRD2
FAM90A1
ORMDL3
GSDMB
HEXIM2
POLDIP3
CCDC86
TIGD1
EIF4E2
CPPED1
TEX9
RFX7
REX1BD
SH2B3
H1-0
GCAT
ETV1
TMEM167B
RPS6KA1
TMEM238
TMEM190
RPL28
NREP
NFATC2
SOX10
BANP
BOD1L1
VMO1
PSMB6
GLTPD2
TUT1
MTA2
NCOA3
PPP4R3B
RCC1L
ZNF106
SNAP23
SRSF6
ZNF253
LGI4
FXYD7
FXYD1
RAB13
RPS27
PTPN6
C12orf57
ZER1
ANKRD40
ZBTB37
SLC35A3
MTHFS
ILVBL
FXYD3
PTPRH
RUVBL1
ZC3HC1
ATF6
VPS72
PIP5K1A
NSUN4
BICD1
C3orf49
CALR3
C19orf44
NEK8
RPL23A
RAB34
PROCA1
TLCD1
MRPS14
INPP5F
SNTB1
TTI2
EIF4A2
HNRNPA1L2
NBPF1
RFX3
ZSCAN22
ZNF554
ZC3H10
RPL41
MRM3
GLOD4
TNFSF14
TP53BP2
SLC23A3
NHEJ1
EXTL1
TMEM40
SPIN2B
POLR2J
LSM8
PLD4
LRRC37B
TFAP2B
TRIM60
RPL29
SCAMP3
FAM189B
RPS3A
RPS14
MRPL39
WASHC5
NSMCE2
DDX19B
AARS1
CERS2
ANXA9
SLC36A1
C7orf61
SNRPE
NMNAT1
LZIC
LMNA
FUS
RPL13
B4GALNT3
CFAP20DC
CT45A3
EXD2
LDAH
HOOK2
SLC26A2
USP2
RNF216
NEK6
TMEM115
NPRL2
CYB561D2
UTP3
RPS11
RPL13A
ZNF358
MCOLN1
SYT5
SNX19
BCL3
ANAPC5
AP4E1
CCDC88A
C16orf72
RPL7
RDH10
ARID1A
CFAP45
GPR176
ZNF708
EPHA3
ZNF56
VPS45
SDHAF3
ABHD12
PCOLCE
MOSPD3
AK3
MYBPC3
UNKL
C16orf91
SEC13
NUPR2
CHCHD2
MFF
SEC22B
NAA20
TRA2B
TAF5
PKM
BBS1
CAAP1
SCNN1A
LTBR
EMC3
CARD17
PDE6D
COPS7B
CBWD2
NBN
MBTPS2
KCTD3
TENT4A
TRAF1
VIM
PARP4
ZCCHC4
YJU2
SART1
THOC5
LIG4
ABHD13
TPK1
TBL1X
NDRG1
CYP2E1
CCN5
PKIG
TARBP2
MAP3K12
H3C8
H2BC10
PBK
DCUN1D5
TAF13
RBM14-RBM4
RBM14
SERINC3
CDH19
CWC25
LRRC59
MRPL48
HNRNPH1
MKRN1
WBP1
INO80B
C8orf33
LSM5
AVL9
NOTCH2NLB
AARS2
RAF1
NFE2L2
ZNF791
ZNF490
ITPKC
COQ8B
LRP6
ACTBL2
FAM228B
TP53I3
SF3B6
CARD9
GPSM1
OSBPL11
ELOB
NDUFAF5
ESF1
EPHB4
NACA
PRSS33
TRIM46
KRTCAP2
CEP120
PPP1R1B
GLIPR1L1
CAPS2
LDHA
LYPLAL1
PLEKHG5
POLG
POLR3B
FRG1
FANCD2
LAMTOR5
RMDN2
PCOTH
MIPEP
C1QTNF9B
ABR
UNK
H3-3B
MTR
POLR2J3
UQCC3
LBHD1
TCTE3
ERMARD
RANBP6
KIAA2026
ZNF564
SURF2
SURF1
RPL7A
MED22
COIL
CSKMT
C11orf98
MARCHF7
HOXB3
HOXB5
HOXB4
STEAP1B
ALLC
SEC61A1
NOTCH2
CDC16
VPS33A
RFFL
DEF8
ANKH
HPS6
ARMH3
IDH3B
NAXE
GPATCH4
POLG2
DDX5
PHLDA3
MEOX2
DNM1L
ZNF45
FAM187A
EFTUD2
CCDC103
REXO4
ADAMTS13
MRPL40
HIRA
SMG8
H4C9
ID1
H2BC12
H2AC12
TOMM20
CRB1
GTF2IRD2B
RASA3
INTS2
BCL2A1
APH1B
NT5DC4
LTBP1
GFAP
SLC25A21
USP4
CYB5R4
EML2
MBNL2
MAPRE2
VWA1
TMEM88B
ART4
NSA2
GFM2
STMP1
ZBTB40
YBX3
LONP2
ABCC11
RBM17
PARP2
CCNB1IP1
ZNF443
TUBA1C
RNF213
PSMB4
FBXO38
SURF6
TTC26
CBX5
HNRNPA1
H2BC11
H2AC11
ERMP1
NANOS3
STN1
KDSR
H3-2
COL16A1
LOXL4
BOD1
LTA4H
DNM2
RPL5
PNPO
WIZ
ZNF581
ZNF580
TOMM34
STK4
CHD1
LUC7L3
CALM2
GNPAT
C1orf131
ZNF76
ATP5F1E
ALDH9A1
ELAVL3
SRSF5
PLPP4
PCGF2
SCGB1C2
ATAD2B
KDM6B
SH3TC2
SPRY2
NHLH1
CT45A9
CT45A8
CT45A2
ZNF337
FBXL18
TIMMDC1
SAMD10
PRPF6
TAF3
IL6R
IPP
GOLGA4
TMEM170A
SPRED1
FAM78B
XKR7
MAGEA2B
MAGEA2
CSAG3
RPS21
DCAF8
HEMK1
C3orf18
H4C8
UBXN1
KMT2E
EFCAB2
EPB41
TMCC2
MMAA
TAGLN2
ZNF561
ZNF609
PLA2G4C
TUBG2
PLEKHH3
MYPN
COMMD1
GRPEL2
CCT4
CLTC
TRMU
RPL37A
SACM1L
MLEC
DHX9
FCRLB
MCL1
PEX2
COA1
PARD6B
TMEM41A
SNRPD1
CTNNB1
H4C1
H3C1
H1-1
SPRED2
MANSC1
BORCS5
LARP1
MPG
RNF6
RHBDF1
IFT46
ARCN1
TJP2
DUSP4
PRNP
GIP
HIKESHI
RBSN
G6PC3
RPL35
ARPC5L
LSM12
WDR38
KIAA0895
DCLRE1B
AP4B1
IQSEC1
CAPRIN2
ABCA1
APP
ARGLU1
FRG2C
CCDC90B
CLDN6
TNFRSF12A
THOC6
HCFC1R1
TIMM10
SMTNL1
WASHC2C
GTPBP3
ANO8
CEP164