ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

GSTA4
STX16
FRA10AC1
MTRNR2L2
SEMA6A
FAM98B
MTRNR2L8
DRG2
NDUFAF1
DCAF10
SMARCD2
GBA
TATDN3
NSL1
H4C15
H4C14
EXD1
CHP1
C17orf75
FLOT1
IER3
FAM227B
DTWD1
WDR36
STX18
SLC5A3
MRPS6
DSTYK
TPT1
CDK5RAP1
IST1
ANKRD40
RGPD2
RGPD1
TRIP4
MAN2C1
ZC3HC1
TACO1
INPP5F
RAD54L2
BNIP1
CUL4A
PCID2
NUF2
DCP1A
NME1-NME2
NME1
MTF2
DPY19L4
INTS12
GSTCD
WDR74
LRRC37A3
AURKAIP1
SAR1B
TMEM242
H2BC18
H3C13
TMEM256
COMMD2
H2BC21
H2AC20
H2AC21
STAT6
ANP32E
RBBP5
NKIRAS1
RPL15
SLC24A1
INTS14
AP3S2
TPRKB
H4C11
SLC25A51
TEFM
KDM1A
EIF2D
NDUFS7
TTC4
PLEKHM3
SF3A3
ACOT7
KANK1
CTNNB1
ACBD6
NFE2L2
LRATD2
SPRY4
ZMPSTE24
H4C12
NDUFS3
KBTBD4
NDUFC2-KCTD14
NDUFC2
PSMD1
TOMM5
MTBP
MRPL13
RPS27
H4C3
ERCC1
PHLDA1
GTF2H2C
GTF2H2
ATXN7L2
CCDC107
NOTCH2NLC
TTC26
PEX3
ADAT2
SLC20A1
SERPINE2
LAMP1
LSM5
PIGL
S100A6
HMGB1
USPL1
POLR3B
HEXIM2
MRPL40
HIRA
VPS45
ASB6
RPS6
NMNAT1
LZIC
SMG8
RPL37
ZNF827
PIGC
ID1
DDIT4
CCNL1
RBM28
WWOX
XPA
DTX2
MRPL44
ZER1
NR1H3
ACP2
WDR70
TOR1AIP1
DNAJC25-GNG10
DNAJC25
ZNF609
TUBGCP3
ANAPC5
SNRPE
SIRT4
NPM1
ZBTB45
RPL3
JUNB
RRP15
JRK
BTF3
DERA
USP30
MRPL39
NUFIP2
PDE8A
GFOD2
OPA1
GTF2H2C_2
CBX5
HNRNPA1
RFXANK
BORCS8
SNTB1
FEM1B
FAM228B
SF3B6
KCTD5
ITGB3BP
EFCAB7
COX16
BTG1
MTOR
G3BP1
SLC26A2
H2BC11
H2AC11
AARSD1
NSUN4
SELENOH
RPL9
LIAS
FXYD3
TFAP2B
EEF1A1
SPATA24
SSBP2
LDAH
LIG4
ABHD13
CLTC
RCOR3
SAAL1
ARL14EP
SOD2
WTAP
H3-2
EIF3G
POLR2C
DR1
PRKCE
ZNF460
ZNFX1
CPPED1
MRPL21
IGHMBP2
SLC6A15
MBTPS2
MRPS23
RPS20
S100A2
RPS3
PTCD1
CPSF4
OTUD7B
SSBP1
NR4A1
ACY1
SOX5
SNRPB2
RICTOR
CDKN2AIPNL
RBM45
MRPL24
ABHD12
AGMO
NNMT
COQ8A
HEMK1
R3HDM2
SNRNP70
BFSP1
PPP6R1
TUBB3
LOXL4
ATP5MC2
ERCC6L2
ZSCAN30
S100A16
MRPL1
SLC44A1
CGGBP1
C3orf38
MTMR2
ITPRID2
TMEM222
DNAJC14
ACBD3
KCTD3
STAT3
NCSTN
COPA
H1-3
AMACR
FBXO22
H2AC19
H2AC18
RCAN1
C12orf57
PCIF1
UCHL5
RO60
EEF1AKNMT
MTAP
PYROXD2
SAGE1
CT45A10
BOD1L1
POLDIP3
STARD13
SEC13
SECISBP2L
NOTCH2NLB
EFCAB2
NDUFA9
AKAP3
TOMM20
MOSMO
KANSL3
ZNF76
SERPINA3
PGBD2
PTPRG
KIF22
WWTR1
MRPL48
H3C15
H3C14
MIS12
DERL2
UCN2
H1-4
TIMP3
KCNMA1
POLR3F
DZANK1
ALG1
WDR11
RIOK1
CAGE1
MRPL53
RPL32
IFRD2
CALCOCO1
UCKL1
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
PHB
TCEA2
SMPD3
BOD1
CLPB
MMACHC
CCDC163
FEM1A
HIKESHI
PAFAH2
PNKD
AAMP
ST3GAL2
GSPT1
CHMP4B
NUDCD1
TSNAXIP1
RANBP10
BTRC
TMTC3
CEP290
PPRC1
KBTBD6
AP2S1
PANK4
PEMT
AHCYL2
CRTC2
PRCC
MICOS13
HSD11B1L
KBTBD7
DDX23
PPP1R12C
C1orf159
LARS1
INVS
ERP44
CTU1
UNK
PPP1R12B
PHF12
ZNF225
ZFYVE1
VCPIP1
C8orf44-SGK3
TSSC4
GTPBP2
GTF2H4
NTAN1
MAD2L1BP
BANP
SYMPK
ZNF444
ORMDL3
TNFAIP1
IFT20
NPRL2
CYB561D2
FOXA3
SLC35B4
SCAF1
UBQLN4
LAMTOR2
GFUS
FASTKD1
SNX17
EIF2B4
RPIA
STAU1
WDPCP
MDH1
TTC13
ING3
ABCF2
STK25
SLC4A2
CDK5
CCDC146
TTC33
SCRIB
ZSCAN22
GATB
INTS9
HMBOX1
C16orf91
TIMM21
FBXO15
ACTR1A
CCP110
ZNF749
COX7C
MED15
NOP14
GRK4
BOLA1
JOSD2
AP2M1
UBR2
ZFYVE19
DNAJC17
CLEC16A
ZNF337
TMEM59
WDR87
SIPA1L3
TSC2
NTHL1
TMEM127
CIAO1
MAF1
TFEB
ZNF56
WNK1
SIRT2
NFKBIB
PHF13
C19orf53
TRAPPC3
UBAC1
ZFYVE28
CFAP99
RPS7
SMARCAL1
DFFA
BUB1B
DESI2
ATP5F1D
RIC8B
KMT2B
VPS50
HEPACAM2
FBXW11
DCAKD
RPL8
ZNF189
MRPL50
NMT1
TFPT
PRPF31
ING4
ELOC
IPPK
TMEM208
LRRC29
RPGRIP1L
FTO
CCDC90B
SESN1
DYNC1I2
FBXO46
SUFU
BUB3
PSMD11
RANGAP1
ZNF235
SOX6
C11orf58
USP48
RAB5C
RAB1A
CAPN15
ATP5PO
THRAP3
SLC25A19
LETM1
PRRG2
NOSIP
CTF1
THYN1
ACAD8
TMEM160
FBXL19
CNIH4
ZNF169
TRAF7
ZNF420
NUDT13
COPS7B
OSCAR
NDUFA3
PEX26
CCDC150
TMEM101
FBXO48
APLF
CCAR2
ZNF224
B3GALNT2
TRAK2
STRADB
RALBP1
VIPAS39
AHSA1
CLP1
CHCHD3
GPANK1
CSNK2B
ZC3H11A
MARS1
ARHGAP9
RBL1
SNX27
MED23
ZNF140
TBL3
ZNF354A
DDX49
COPE
ZNF350
ZNF554
KAT7
RABAC1
STK17A
CLDND1
ZNF384
FAM193A
RPL18A
RBM6
LMNB2
PDE6D
PANK3
TMEM43
CHCHD4
CTDP1
FAM185A
PA2G4
BIRC5
SMUG1
UFSP2
CCDC174
NFXL1
NDUFS2
SERPINI1
PDCD10
CDK5RAP2
GPKOW
HTRA2
SEPTIN9
UBE2Q1
UTP11
WRNIP1
ZNF230
TMEM102
NUP153
TBX6
ZNF37A
CNOT4
ZW10
PNPLA6
AKIRIN2
EXOSC4
FAM222A
CNOT1
ZNF133
LTA4H
RPS6KB2
TMEM245
RPS19
UBL7
DUS3L
ZNF527
BICD2
HBP1
SLMAP
SDCCAG8
CEP170
ZCCHC4
SLC33A1
WBP2
POLR2E
FDPS
ZNF226
PIGU
SPHK2
RPL18
RALGAPA2
HSPA13
MXI1
LIN37
RPS26
RPS13
PGBD4
EMC7
SEC61A1
INO80B
C1orf109
PHF23
TIMM13
SCAMP4
ADAT3
COMMD9
LUC7L
PHB2
ZGPAT
ARFRP1
ZNF2
SYPL1
DGAT1
CIAO2A
PCM1
PTBP1
QTRT2
CCDC191
CFAP410
NCLN
METTL26
ZNF32
ZNF547
TRAPPC2B
AHCTF1
MTMR9
SPATC1L
RPP40
PSMD4
TXNDC9
EIF5B
WDR53
FBXO45
SEC11C
GALK2
ZNF419
MED27
RPL29
TTC1
AQR
CIC
CAND1
ZCCHC8
CWC22
THOC6
HCFC1R1
ZNF484
ENOX2
RAB29
TMEM69
INTS1
ASXL1
SLX1B
SLX1A
BOLA2B
BOLA2
ZNF343
ZNF26
TMEM186
PMM2
RPL23A
CDK8
TERF2
WAPL
GPBP1L1
PRR14
USP35
KCTD21
GINS3
MAX
ZNF451
FAM207A
MRPL20
ZNF500
MGRN1
RAB30
MED11
PSMD2
COPS7A
GSK3A
ZBTB7A
TSACC
CCT3
NFKBIL1
ATP6V1G2
CWC25
IGSF8
UBE2J2
PSMC4
NCBP2AS2
NCBP2
GID4
ATPAF2
DDX47
NOLC1
CDC25C
LSG1
EIF1B
ZMAT5
UQCR10
SSR3
UBA52
ILF3
ALG10B
SSR2
ZNF227
METTL3
BOLA2-SMG1P6
PSMF1
ZNF747
RPS3A
ZSCAN32
ZNF174
PEX12
L3MBTL2
COPS2
ADSS2
KBTBD8
SCAMP3
USP31
GPR108
THAP1
PES1
LEMD2
SYNGR4
SLC38A9
VAPA
WASF1
CDC40
TMEM199
POLDIP2
FAM53C
SUGP1
MAU2
GPR137
HIRIP3
EXOC4
PPP6C
ZNF805
RPL27
CFL1
PRKCI
MTR
GFM1
ZNF862
ZNF17
TOR2A
ZNF567
RNASEH2C
UTP3
PSMD3
MEN1
VPS4B
NCDN
KIAA0319L
RETSAT
CARS1
TSN
DPP9
NUTF2
CENPT
ZNF25
POLR2J3
ZNF773
PPP1R13L
POLR1G
ZSWIM9
LIG1
SASS6
ZNF586
C12orf43
CLPP
CSRNP2
ZNF277
DOCK4
NDUFB5
MRPL47
RACGAP1
RPL22
AMD1
ATP5MF-PTCD1
ATP5MF
SKP2
LMBRD2
TOR1A
EIF3C
XPOT
ARMH3
ABRAXAS2
PRKCSH
CCDC151
POLRMT
ALG10
EIF3CL
PSMB4
SMN2
SMN1
ZNF584
DEDD
TRMT1L
SWT1
CCDC124
EIF3D
B4GALT7
N4BP2L2
VEZT
FGD6
YJU2
AKAP8
TMEM33
FBH1
ANKRD16
VKORC1
ZNF684
EIF2S2
GPT2
SERP1
EIF2A
CXXC1
DHX8
AP2B1
RTEL1
CIAO3
TUT1
DNM1L
SNAPC3
PSMB6
ZNF45
COPS8
ZNF436
MEA1
KLHDC3
SCYL3
VRK1
ZNF605
WDR46
PFDN6
TMED9
ESCO2
TMEM41A
IPO7
INTS4
KATNB1
CNOT6
ZNF165
RAB3C
MRPL54
ZNF628
GGPS1
ARID4B
RAB7A
IFRD1
NUP205
ZNF548
MRPS18C
HELQ
SKIV2L
NELFE
MRPS16
CCNT2
ZNF764
YIPF2
TIMM29
KHDC4
SF3B2
CRK
PUM3
KRR1
SFXN5
APH1A
COG2
DARS2
CENPL
CAPN10
ABT1
NSA2
GFM2
TSNAX
TOMM22
ITPR1
DHX33
BET1
APBA3
IPO13
KLHL20
ZRANB3
R3HDM1
SNAPIN
RPL12
LRSAM1
MIA3
SNAP47
JMJD4
RWDD1
MORF4L1
ZNF585A
GEMIN6
ZNF416
BRIX1
EIF3F
USP15
RFX1
MYBL1
FAM168A
NOP16
HIGD2A
ABCC5
ZNF599
TIMM22
DOHH
PPIP5K2
GIN1
CNPY2
TLE4
DCAF1
DMAC1
RAD52
RPL34
DNAJC28
ZNF180
ZNF691
DPM3
TPGS1
MRPL3
ACLY
TRUB2
COQ4
TRABD
FBXO38
WIZ
UBE2V1
SART1
RUVBL1
BABAM1
OAZ3
MRPL9
PARK7
ZNF221
MAMSTR
TRUB1
ELP6
UBXN8
EMSY
DPH2
MED24
TPR
ODR4
ETFDH
C4orf46
NUP107
TMEM94
SH2B1
RAD51AP2
NUMA1
LRTOMT
SEL1L
LTN1
SLC39A13
SETDB1
SERBP1
ZNF565
ZNF146
DNM2
PRPF4
CDC26
CEP57L1
ZSCAN5A
REXO2
PRAF2
SH2D6
NAA38
CYB5D1
ZNF776
SMG5
MVB12A
SETMAR
KIF15
KIAA1143
TOGARAM1
KLHL28
FOXJ3
NFKB2
TMEM258
FEN1
CHCHD6
NR1H2
DNAJC11
UBE2N
TUFM
CEP350
BLOC1S5
WASHC3
NFATC2IP
NOP53
TTI2
WDR24
WASHC4