ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2375366 | MV-4-11
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◣ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

NLRP12
WDFY3
GATA4
SPATC1
LAMP1
NFKB2
MEF2C
PLSCR1
XRCC5
ABT1
GNG2
GSTA4
CMPK2
CALCOCO1
TLR4
FEM1A
CALR3
C19orf44
PGK1
RPS19
SMPD3
STEAP4
PTK2
NUDCD1
PDLIM2
UBXN8
BOD1
NUTM1
NOP10
NIBAN3
H4C11
RNF149
APOL6
ZNF221
IFRD2
NEDD9
H4C12
CD1A
DOCK8
PEX12
DCAF12
GBA
NR3C1
H4C3
TMEM91
B9D2
DDX58
TMTC3
CEP290
NBN
ASGR2
SCNM1
LYSMD1
GHRL
KBTBD6
H2BU1
H2AW
CTU1
PPP1R12C
INTS9
HMBOX1
MTMR9
RPS20
CLPB
ZNF780A
MS4A3
ZFYVE1
TMEM115
ZNF444
HIKESHI
SH3BP2
MINDY3
MRPL24
FBXW4
EXD1
CHP1
DYNC2H1
TASL
TSNAXIP1
RANBP10
VCPIP1
C8orf44-SGK3
ZSCAN30
NDUFS7
NUF2
SIGLEC6
MICOS13
HSD11B1L
PANK4
CD33
EXOSC4
RAB4B
SPRED2
LTB4R
PEX3
ADAT2
RUBCNL
ST3GAL2
NBEAL2
KBTBD7
H4C15
H4C14
PAFAH2
RFX1
PROS1
ZNF225
MMACHC
CCDC163
PNKD
AAMP
H4C9
MITD1
BRF2
SLC1A5
TPRKB
BTRC
IPCEF1
MEFV
PLEKHM3
MTF2
CHMP4B
PPRC1
H2BC18
H3C13
MRPS18C
HELQ
TMEM243
DENND3
GSPT1
DDX18
BAZ1A
TYROBP
RMND1
ARMT1
CCDC152
FOLR2
TRIP4
RAB39A
INVS
ERP44
ALOX5AP
TOR1AIP1
AP2S1
CCAR2
FIGNL2
ARHGAP25
PHB
KRR1
TM6SF1
MED23
ZNF226
P2RY14
DISC1
UCKL1
NDFIP2
PEMT
CARD8
EHD1
FRG1
KANSL3
RMDN2
RAC2
NCF2
IL1RN
COPS7A
BANK1
CTTN
YES1
CCDC146
GRPEL2
ENOSF1
ARID5A
NME7
BLZF1
TAF1B
INPP5D
CCER2
ZSCAN22
POMP
ZCCHC4
STAP1
CLEC10A
ICAM1
ITGA4
PRCC
INSC
FLOT1
SIGLEC1
DCP1A
LRRC37A3
FAM227B
DTWD1
TAL1
JOSD2
UTP3
WASHC4
SMC6
GEN1
PARP10
PGBD4
EMC7
AURKAIP1
GATB
INTS12
GSTCD
NOTCH1
PRRG2
NOSIP
MTIF2
PRKCE
VAV1
GALK2
COPS2
AHCYL2
RPS7
ANKRD18B
IPPK
RIPK1
VPS26A
TBC1D19
CA13
FRA10AC1
TMEM154
TTC33
TEFM
ARPC3
GABPB2
UBR1
ASPHD2
FBXO46
USP3
CTSG
LILRA2
OBI1
RFFL
SHISA5
RAB27B
ERLIN2
SSBP2
PPP6R1
PPP1R12B
SYMPK
FOXA3
TBPL1
DPY19L4
SSBP1
SF3A3
RPL6
TMEM68
TGS1
CCDC149
VPS13B
DR1
RPL5
DDX1
PIK3CG
ZAR1L
BRCA2
LMO2
TNNI2
PHF12
TSSC4
FASTKD1
LCE3A
RBBP5
CRTC2
WDR74
PEAK3
SLC35B4
ZNF268
BORCS7
ZC3HAV1
DHX8
SLC35F5
H3C3
H1-3
RPS6KA1
SCRIB
NDUFB7
MRPL42
BCL2L13
RNPEP
SPATA24
CEACAM21
IRF9
FAM228B
SF3B6
GTF2H2C_2
GTF2H2C
BNC2
CSF2RB
CARD19
PPP1R11
RPIA
ANXA2R
FAM133B
LCMT2
ADAL
ZNF554
TRIM35
PTK2B
SECISBP2L
NSMAF
RPGRIP1L
FTO
ARHGEF18
TACC1
ALG10
TTC14
GTF2H3
EIF2B1
FAM167A
SLC24A1
INTS14
ZNF350
PCBP2
DPY19L3
RALB
SEC14L1
ZNF56
ZBTB45
PPIP5K2
GIN1
TCTEX1D1
ZNF224
MRPL48
NINJ2
CCR1
DSTYK
MRPL1
ZC3HC1
PLCXD2
USF1
CCDC88A
PARP2
CDK5RAP2
TMEM242
CCDC90B
JRK
CHCHD5
INO80D
HCK
FUT10
PSMA8
PLEKHA4
LSG1
SDSL
PPM1M
TMEM229B
TACO1
PCM1
TTI2
NUCB1
ZNF235
COMMD2
H4C4
SNX17
EIF2B4
HUS1
ADAR
SIRT2
NFKBIB
PSMF1
MRPS23
AP3S2
CCDC9
PEX2
PIGV
APPL2
TSC1
GFI1B
SMG6
CAVIN2
GFUS
ZNF286A
ANKRD40
ZNF518A
SLC1A4
STX7
TFPT
PRPF31
SLC39A13
H1-4
H2BC5
RIC8B
ZNF140
CD93
CHMP7
PPP5D1
CALM3
GNB4
STING1
LARS1
KDM1A
TMEM222
TCEA2
POLR2J3
UBR2
HMGB1
USPL1
RBCK1
ZNF846
BCL2A1
IDH3B
RPL37
KLHL20
MARCHF5
CPEB3
GAS6
AQR
SLC37A2
NME1-NME2
NME1
SIRT4
SPOP
MORF4L2
UBE4A
HERC6
NFX1
GTF2H2
ZNF148
BRWD1
SUPT7L
SLC4A1AP
EIF2D
INTS10
ZBED4
MPG
TNFAIP1
IFT20
SCAF1
SAR1B
MCUB
ORC2
NAIP
GOSR1
INKA2
DDX20
INO80C
PRIM2
ZC3H6
SIRT6
ANKRD24
ACTR3
MKRN3
PSMD9
HPD
POLE4
TRIP12
FBXO36
MRPS31
CTNNB1
ARHGDIB
FOXP1
SCAMP4
ADAT3
N4BP2L2
TMEM41A
TRDMT1
HIBCH
KDM3A
POLDIP3
USP15
SEC22B
PPP3CC
H4C8
MED4
MARCHF6
ESCO2
RRS1
PLEK
ANKRD22
DDX23
TATDN1
NDUFB9
MALT1
SLC22A18
CCNL1
PSMC1
C1orf159
SLC45A4
VPS50
HEPACAM2
ING4
ALG10B
H1-2
H2BC9
H3C7
GFOD2
SLC44A1
SLC22A16
TIGD6
HMGXB3
EMC4
TRIM69
DCAF10
NUFIP2
CWC25
RXFP1
THAP1
MRPL27
EME1
FBXW11
ZNF420
ZMPSTE24
TMBIM4
COX7A2
BNIP1
COX7C
C12orf57
ZNF212
PSMA1
DRAP1
C11orf68
FNTA
ASH2L
MYBPH
BOLA1
TVP23B
ARL8B
POLR2M
TFEC
RPL27
H3C1
H4C1
BAZ2B
ARMH3
SETDB1
DRG2
SLC35E2A
BMS1
RPS15
TPR
ODR4
MCTP1
COPS4
H4C5
TBRG1
GTF2H4
CCNC
PRPF18
TXNDC15
AOAH
CAMP
TATDN3
NSL1
CCDC59
CCDC114
E2F4
OPA1
CCDC124
TSSK6
NDUFA13
MYL12B
NUDT13
WASHC5
NSMCE2
TFEB
METTL3
NOTCH2NLC
ZNF331
ZNF76
TSG101
CNPY3
TRIB1
SPIDR
PPIL2
CYP4V2
DENND4B
DSCC1
CDK5RAP1
USE1
VTA1
NMBR
CBLL1
MOB4
ALDOA
SIGLEC16
RNASE10
C1QA
PCNP
RBM45
LSM8
UTP23
RASA1
TESPA1
ETV6
PTGS2
ORMDL3
BRIX1
C18orf21
S100B
H3C2
MICU2
RPL29
PRKCI
MRPL34
HDDC2
MRPS15
LYNX1-SLURP2
LYNX1
H4C6
BANP
DOHH
ZNF180
LUC7L2
FMC1-LUC7L2
FMC1
MBNL1
ZKSCAN4
UBLCP1
PEX26
VIRMA
ZNF557
RAB11FIP1
WNT2B
NFKBIA
NUDT7
TTC13
SASS6
ZCWPW2
AZI2
N6AMT1
PSMC6
RAB3GAP1
MRPS10
RPL23
METTL6
EAF1
UNC45A
TLR1
KMT2B
MARS1
ARHGAP9
MRPL44
MRPL16
TCF3
NOTCH2
SUGT1
ZNF749
ARHGEF1
HARS2
HARS1
SIGLECL1
PDCD6IP
ZNF574
MAGOHB
C19orf53
TOP3B
H3C8
COMMD4
MAPK1IP1L
FBP1
TIMM21
FBXO15
CDIPT
COX18
RUFY3
NDUFS3
KBTBD4
LTN1
NUP54
SDHAF2
CPSF7
MX1
SLC7A11
SH3TC1
MRPL3
ADPRS
UBE2F
RABGGTA
VRK2
PTPN12
POLR3B
EIF2B3
NEK4
AVIL
LIN37
CNTRL
P2RY6
POLE3
C9orf43
DNAJB12
RPL31
THEM4
HEATR5A
F2RL3
TMCO1
BECN1
APOBR
NCF4
SULT1B1
FAM160A1
KRT36
ELOC
PDSS1
DGAT1
NSFL1C
SLC25A23
POLI
TNFRSF10A
C8orf37
NKAPL
WDR70
KMT2E
UNK
YIPF2
TIMM29
VPS25
TMEM65
HENMT1
PSMB8
WDR24
SLC25A32
DCAF13
TBC1D13
ANKRD13D
ZNF410
IKZF1
MED18
TTC26
RAD23A
CCDC107
R3HCC1
GSK3A
NDUFAF1
H2BC21
H2AC20
CCNI
H2AC21
SFSWAP
POGLUT3
CCM2
SGF29
SMARCA2
H4C2
RFX8
RFESD
TBC1D5
ZSCAN31
SLC33A1
ITPRID2
STX3
NPRL2
CYB561D2
UFSP2
PRKCSH
CCDC151
RASSF5
EEF2
LY9
SLFN12L
IFI6
SMC1B
RIBC2
RAD54L2
CD72
SERP1
EIF2A
EIF3G
MSL2
NACA
LST1
PPP2CB
H3C11
MTPN
LUZP6
ZNF3
ASB6
ERCC1
WDR87
SIPA1L3
USP30
CHD1L
PRKAB2
MTERF1
RPL17-C18orf32
RPL17
LIN54
GTF2IRD2B
EIF3H
DNAJB2
BSDC1
FLT3
EIF3F
TSFM
H3C15
H3C14
NUDT2
KIF24
ZNF573
CFAP298-TCP10L
CFAP298
TNFAIP8L2
RASSF2
C10orf88
PIGL
HINT3
ARL11
DESI2
EIF1B
ACBD6
THOC1
RFX2
ZC3H4
ARL14EP
RCOR3
SNUPN
RPL7A
MED22
ARHGAP24
MARCHF7
RGS14
MTMR6
KAZALD1
RIPK2
VKORC1
METTL18
C1orf112
RPL36
TM2D1
RPRD2
DBN1
CPQ
GPAT3
TFB2M
CNST
GDAP1
STAMBPL1
H2BC12
H2AC12
TMEM101
ZNF408
ARHGAP1
TARBP2
RPL11
CAB39
UBE2V2
HIGD2B
BBS4
IQGAP2
RFX3
ZC3H11A
C1orf53
PPCDC
CGAS
GPR141
SUGP1
MAU2
RRP15
TRIM44
EFCAB2
TRAM1
KASH5
CMTR1
FBXW7
NFE2L2
SNRPE
VAMP8
OR8G2P
ZNF333
ATAD2B
WDFY1
NUP153
ZNF527
TERF2
TOMM22
MRPS33
SNF8
SNX14
C1RL
RNASE2
AP1G1
PIGBOS1
PIGB
LOC112694756
NTAN1
AP2B1
MCOLN1
PSMB7
VPS29
RAD9B
HEXIM2
THOC5
MTBP
MRPL13
TRIM25
FBXO34
MAPKAPK3
DOCK2
CISH
FBXL19
NOTCH2NLA
DTNA
MED15
ATP13A1
ATAD2
GOLGA3
GABPB1
NAGA
RBM28
TIMM10
RPP14
HTD2
EXOSC3
MFSD3
RPL37A
KMT2C
C2CD5
PLAGL1
CAPN15
DMAP1
ZNF155
NCBP3
TSEN15
CDC73
UHRF2
IL4I1
RSU1
E2F6
UBQLN4
LAMTOR2
ING3
SMARCAL1
HEATR1
TMEM259
NOTCH2NLB
LILRB1
RUVBL1
SNRNP200
AFG1L
JMJD1C
KCTD18
MUC1
KATNBL1
AFF3
LTBR
FPR1
LGALS9C
MS4A14
C12orf43
YARS1
S100PBP
SRSF7
KLLN
PTEN
ATP2B4
H2BC8
H2AC8
CCPG1
C15orf65
C1orf74
CRADD
DDX56
RPF1
ARL6IP5
RAB3C
RPL38
STAT1
WDR55
OAS2
REXO5
ERI2
CCL3
HCLS1
ZNF337
LARS2
CCZ1
PDS5A
RPL30
NCF1
SYCP1
REXO4
DMTF1
FAM200B
IFI35
GALNT3
KCNJ2
SNRPB
C17orf75
FKBP5
OCIAD1
LSM14A
PRKACA
MPZL3
STK38L
CSF2RA
TMEM59
VIPAS39
AHSA1
ELOB
TTC4
NDUFB3
FAM126B
TMEM123
H1-5
PRKACB
H2AC16
PGM2L1
RBM12B