ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3408659 | KELLY
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◣ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

MTRNR2L2
MTRNR2L8
SPATC1L
SP2
FOCAD
WDR74
H2BC21
H2AC20
H4C15
H4C14
RNF187
POLDIP3
H3C13
C12orf57
UNK
FLAD1
HIBADH
H4C3
GSTA4
H4C12
H1-2
H2BC11
H2AC11
H4C11
H4C9
PHF5A
ACO2
H1-4
IFRD2
CALCOCO1
UCKL1
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
PHB
TCEA2
SMPD3
BOD1
CLPB
MMACHC
CCDC163
FEM1A
HIKESHI
MRPL24
PAFAH2
PNKD
AAMP
ST3GAL2
GSPT1
CHMP4B
NUDCD1
TSNAXIP1
RANBP10
BTRC
TMTC3
CEP290
PPRC1
KBTBD6
AP2S1
PANK4
PEMT
AHCYL2
CRTC2
PRCC
MICOS13
HSD11B1L
KBTBD7
DDX23
PPP1R12C
C1orf159
LARS1
INVS
ERP44
CTU1
PPP1R12B
PHF12
ZNF225
ZFYVE1
VCPIP1
C8orf44-SGK3
TSSC4
GTPBP2
GTF2H4
NTAN1
MAD2L1BP
BANP
SYMPK
ZNF444
ORMDL3
TNFAIP1
IFT20
NPRL2
CYB561D2
FOXA3
SLC35B4
SCAF1
DSTYK
UBQLN4
LAMTOR2
GFUS
FASTKD1
SNX17
EIF2B4
RPIA
STAU1
WDPCP
MDH1
TTC13
ING3
ABCF2
STK25
SLC4A2
CDK5
CCDC146
TTC33
SCRIB
ZSCAN22
GATB
INTS9
HMBOX1
C16orf91
TIMM21
FBXO15
ACTR1A
CCP110
ZNF749
COX7C
MED15
NOP14
GRK4
BOLA1
JOSD2
SSBP1
AP2M1
UBR2
ZFYVE19
DNAJC17
CLEC16A
ZNF337
TMEM59
WDR87
SIPA1L3
TSC2
NTHL1
TMEM127
CIAO1
MAF1
TFEB
ZNF56
WNK1
SIRT2
NFKBIB
PHF13
C19orf53
TRAPPC3
UBAC1
ZFYVE28
CFAP99
RPS7
TOR1AIP1
SMARCAL1
DFFA
BUB1B
DESI2
ATP5F1D
RIC8B
NUF2
KMT2B
VPS50
HEPACAM2
FBXW11
DCAKD
RPL8
ZNF189
MRPL50
NMT1
TFPT
PRPF31
ING4
AURKAIP1
ELOC
IPPK
TMEM208
LRRC29
RPGRIP1L
FTO
CCDC90B
SESN1
DYNC1I2
FBXO46
SUFU
BUB3
PSMD11
RPS20
RANGAP1
ZNF235
SOX6
C11orf58
USP48
RAB5C
RAB1A
CAPN15
ATP5PO
THRAP3
SLC25A19
LETM1
DCP1A
PRRG2
NOSIP
CTF1
THYN1
ACAD8
TMEM160
FBXL19
CNIH4
ZNF169
TRAF7
ZNF420
NUDT13
COPS7B
OSCAR
NDUFA3
PEX26
CCDC150
TMEM101
FBXO48
APLF
CCAR2
ZNF224
B3GALNT2
TRAK2
STRADB
RALBP1
VIPAS39
AHSA1
CLP1
CHCHD3
GPANK1
CSNK2B
ZC3H11A
MARS1
ARHGAP9
RBL1
SNX27
MED23
ZNF140
TBL3
ZNF354A
DDX49
COPE
ZNF350
ZNF554
KAT7
RABAC1
NME1-NME2
NME1
STK17A
CLDND1
ZNF384
FAM193A
RPL18A
RBM6
LMNB2
PDE6D
PANK3
TMEM43
CHCHD4
CTDP1
FAM185A
PA2G4
BIRC5
SMUG1
UFSP2
CCDC174
NFXL1
NDUFS2
SERPINI1
PDCD10
CDK5RAP2
GPKOW
HTRA2
SEPTIN9
UBE2Q1
SF3A3
UTP11
WRNIP1
UCHL5
RO60
ZNF230
TMEM102
NUP153
TBX6
ZNF37A
CNOT4
ZW10
PNPLA6
AKIRIN2
EXOSC4
FAM222A
FAM228B
CNOT1
ZNF133
LTA4H
RPS6KB2
TMEM245
RPS19
UBL7
DUS3L
ZNF527
BICD2
HBP1
SLMAP
SDCCAG8
CEP170
RPS3
ZCCHC4
SLC33A1
WBP2
POLR2E
FDPS
ZNF226
NDUFS7
SNRPE
PIGU
NKIRAS1
SPHK2
RPL18
RALGAPA2
HSPA13
MXI1
LIN37
LAMP1
RPS26
RPS13
ZBTB45
PGBD4
EMC7
SEC61A1
INO80B
C1orf109
PHF23
TIMM13
SCAMP4
ADAT3
COMMD9
LUC7L
SF3B6
PHB2
ZGPAT
ARFRP1
ZNF2
SYPL1
DGAT1
CIAO2A
PCM1
PTBP1
QTRT2
CCDC191
CFAP410
NCLN
METTL26
ZNF32
ZNF547
TRAPPC2B
AHCTF1
MTMR9
RPP40
PSMD4
TXNDC9
EIF5B
WDR53
FBXO45
RPL15
SEC11C
NDUFS3
KBTBD4
GALK2
ZNF419
HEXIM2
MED27
RPL29
TTC1
AQR
CIC
CAND1
ZCCHC8
CWC22
THOC6
HCFC1R1
ZNF484
ENOX2
RAB29
TMEM69
EIF2D
INTS1
ASXL1
SLX1B
SLX1A
BOLA2B
BOLA2
ZNF343
ZNF26
TMEM186
PMM2
RPL37
RPL23A
CDK8
TERF2
WAPL
GPBP1L1
PRR14
OPA1
USP35
KCTD21
GINS3
MAX
ZNF451
FAM207A
MRPL20
ZNF500
MGRN1
RAB30
MED11
PSMD2
COPS7A
CCNL1
GSK3A
ZBTB7A
TSACC
CCT3
NFKBIL1
ATP6V1G2
CWC25
IGSF8
UBE2J2
PSMC4
NCBP2AS2
NCBP2
GID4
ATPAF2
DDX47
NOLC1
CDC25C
LSG1
EIF1B
ZMAT5
UQCR10
SSR3
UBA52
ILF3
ALG10B
SSR2
BOD1L1
ZNF227
RBBP5
RPS27
METTL3
BOLA2-SMG1P6
PSMF1
ZNF747
RPS3A
ZSCAN32
ZNF174
PEX12
TRIP4
L3MBTL2
COPS2
ADSS2
KBTBD8
SCAMP3
TMEM222
USP31
GPR108
THAP1
PES1
LEMD2
SYNGR4
SLC38A9
VAPA
WASF1
CDC40
KCTD5
TMEM199
POLDIP2
FAM53C
SUGP1
MAU2
GPR137
HIRIP3
EXOC4
PPP6C
SELENOH
ZNF805
RPL27
CFL1
PRKCI
MTR
GFM1
ZNF862
ZNF17
TOR2A
ZNF567
RNASEH2C
UTP3
PSMD3
MEN1
VPS4B
NCDN
KIAA0319L
RETSAT
CARS1
TSN
DPP9
NUTF2
CENPT
ZNF25
POLR2J3
ZNF773
PPP1R13L
POLR1G
ZSWIM9
LIG1
SASS6
ZNF586
C12orf43
CLPP
CSRNP2
ZNF277
DOCK4
NDUFB5
MRPL47
RRP15
RACGAP1
RPL22
AMD1
ATP5MF-PTCD1
ATP5MF
SKP2
LMBRD2
TOR1A
EIF3C
XPOT
ARMH3
ABRAXAS2
PRKCSH
CCDC151
POLRMT
ALG10
EIF3CL
PSMB4
SMN2
SMN1
ZNF584
DEDD
TRMT1L
SWT1
CCDC124
EIF3D
B4GALT7
N4BP2L2
VEZT
FGD6
YJU2
AKAP8
TMEM33
FBH1
ANKRD16
VKORC1
ZNF684
EIF2S2
GPT2
SERP1
EIF2A
CXXC1
DHX8
AP2B1
RTEL1
CIAO3
TUT1
DNM1L
SNAPC3
PSMB6
JRK
ZNF45
MRPS23
COPS8
ZNF436
MEA1
KLHDC3
SCYL3
VRK1
ZNF605
STX18
WDR46
PFDN6
TMED9
ESCO2
TMEM41A
IPO7
INTS4
SIRT4
KATNB1
CNOT6
ZNF165
RAB3C
MRPL54
ZNF628
GGPS1
ARID4B
RAB7A
IFRD1
FRA10AC1
NUP205
INTS12
GSTCD
ZNF548
MRPS18C
HELQ
SKIV2L
NELFE
MRPS16
CCNT2
ZNF764
YIPF2
TIMM29
STX16
KHDC4
SF3B2
CRK
PUM3
GBA
KRR1
SFXN5
APH1A
COG2
DARS2
CENPL
ZMPSTE24
CAPN10
ABT1
NSA2
GFM2
TSNAX
TOMM22
ITPR1
DHX33
BET1
MRPL1
APBA3
IPO13
KLHL20
RBM28
ZRANB3
R3HDM1
SNAPIN
RPL12
LRSAM1
MIA3
SNAP47
JMJD4
RWDD1
MORF4L1
ZNF585A
GEMIN6
ZNF416
BRIX1
EIF3F
USP15
RFX1
MYBL1
FAM168A
NOP16
HIGD2A
ABCC5
ZNF599
TIMM22
DOHH
PPIP5K2
GIN1
CNPY2
TLE4
DCAF1
DMAC1
RAD52
RPL34
DNAJC28
ZNF180
ZNF691
DPM3
TPGS1
MRPL3
ACLY
DNAJC14
TRUB2
COQ4
TRABD
FBXO38
WIZ
UBE2V1
SART1
RUVBL1
BABAM1
OAZ3
MRPL9
PARK7
ZNF221
MAMSTR
TRUB1
ELP6
UBXN8
EMSY
DPH2
MED24
TPR
ODR4
ETFDH
C4orf46
TPRKB
NUP107
SEC13
TMEM94
SH2B1
RAD51AP2
TATDN3
NSL1
NUMA1
LRTOMT
SEL1L
LTN1
SLC39A13
SETDB1
SERBP1
ZNF565
ZNF146
DNM2
PRPF4
CDC26
CEP57L1
ZSCAN5A
REXO2
PRAF2
SH2D6
NAA38
CYB5D1
GTF2H2C_2
ZNF776
SMG5
MRPL21
IGHMBP2
MVB12A
SETMAR
NR1H3
ACP2
KIF15
KIAA1143
NMNAT1
LZIC
TOGARAM1
KLHL28
FOXJ3
USP30
NFKB2
TMEM258
FEN1
CHCHD6
NR1H2
MRPL44
DNAJC11
UBE2N
TUFM
ZC3HC1
PEX3
ADAT2
CEP350
BLOC1S5
WASHC3
NFATC2IP
NOP53
TTI2
ZNF460
WDR24
WASHC4
FIS1
ZC3H6
TLE1
CCDC77
ZNF211
TRMT2A
RANBP1
SHPK
MRPS15
MPI
SNRPB2
HSP90B1
METTL18
C1orf112
TTLL11
GTF2H2C
DMAP1
MITD1
SLC24A1
INTS14
HSPH1
CMPK1
NSFL1C
LCORL
CTNS
FCSK
CCDC59
STRN
IPO8
ZC3H10
COMMD2
CCDC117
CDK9
ZNF530
SNIP1
UBA1
RBL2
EXO1
ZNF668
ZNF646
TMEM230
RCAN1
TM9SF4
SPC25
MYL6B
ZNFX1
ZNF268
XRRA1
SPCS2
FAM149B1
ECD
CDK19
POMZP3
SLC39A3
NUP214
ERI3
CANT1
CD2BP2
BDP1
MTIF2
ZNF155
PSMC3
CUEDC2
AKT1S1
MTF2
NARS1
COPS4
FBXL18
RNASEH2A
CDCA8
KANSL1
PPP2R5B
ZDHHC16
EXOSC1
SMIM13
ZNF317
C7orf25
VPS45
TEPSIN
NDUFAF8
ADPRS
SHLD1
GTF2H2
NEDD8-MDP1
NEDD8
GMPR2
SPDYE14
SPDYE10P
TBC1D17
TTC14
MITF
H2AZ2
NELFB
ACP6
NIP7
COG8
ZNF302
YWHAG
GALM
DDX18
ABLIM2
CDC6
ZNF721
PIGG
SUCLG1
VAMP7
ZNF417
SLC25A44
ATE1
HSCB
CHEK2
BRF2
ZNF286A
TOE1
MUTYH
HEXIM1
SLC37A3
GET4
PUS3
DDX25
TMEM109
RRS1
SSNA1
ANAPC2
SLC30A6
NCOA3
ZNF304
ZNF408
ARHGAP1
WDTC1
JTB
UBE4A
C8orf76
CBR4
PCNX3
AHCY
NR6A1
CLINT1
MRPS33
DAZAP1
PPP1R7
PASK
MRTO4
EMC1
PPP1R11
LONP1
CATSPERD
LRWD1
ALKBH4
TACO1
DPM2
SAP30
PKNOX1
CTNNBL1
SP4
ZNF446
WRAP53
TP53
PGM2L1
ZNF550
NUCB1
POLG
WDR36
SDF4
B3GALT6
MRPL16
OSBPL11
UCK1
ADO
NAPB
RTTN
PCBP2
DRG2
TBRG4
CAMLG
TIMMDC1
CDK5RAP1
REXO1
FBXO9
UTP25
ITSN1
CRYZL1
MARCHF5
CPEB3
ALKBH3
ARHGEF1
PURB
ATG4C
PTRHD1
CENPO
SZRD1
CAP1
XAB2
ZNF354C
SLC35E2A
PSMA2
MRPL32
CACTIN
RPL38
RPS16
ARPP19
TUBGCP3
SNRPD3
GUCD1
BMS1
PPIL2
FKBP1A
PNISR
GTF2H3
EIF2B1
DIAPH1
RDH14
KPTN
ELOB
LRRC47
C8orf33