ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

EXD1
CHP1
SEMA6A
H4C15
H4C14
DPY19L4
STX16
FAM98B
STX18
DDIT4
MTRNR2L2
IST1
MRPL21
IGHMBP2
H4C12
H4C11
SAR1B
GSTA4
NUF2
GBA
AAR2
FRA10AC1
NR1H3
ACP2
TUBGCP3
C17orf75
SMARCD2
SLC44A1
H2BC18
H3C13
NME1-NME2
NME1
UCHL5
RO60
SF3A3
FEM1B
DMAP1
H2AC19
H2AC18
H4C5
TPRKB
RAD54L2
WDR74
GALK2
COPS2
RCAN1
JRK
GTF3C3
PHLDA1
RRP15
H1-2
H3C3
RBBP5
SNAP47
JMJD4
MTRNR2L8
RARS1
EIF1AD
BANF1
NPAS4
DSTYK
TBC1D19
VWA8
RPL37
DCAF10
ATR
IFRD2
H1-4
AP3S2
FLOT1
IER3
TATDN3
NSL1
EIF2D
H4C4
S100A16
MRPL16
TOP3B
CDKN2AIPNL
NDUFB7
SELENOH
ACOT7
RPS7
RPTOR
USP30
CDK5RAP1
RAB5IF
MAN2C1
KMT2C
TRIB3
NDUFAF1
TSEN15
DHRS3
SCNM1
LYSMD1
NDUFA12
TRIP4
OGT
BFSP1
DCP1A
ZSCAN30
CUL4A
PCID2
H2BC21
H2AC20
H2AC21
C12orf73
CSRNP1
GTF2H2C_2
GTF2H2C
SPOP
KLHL20
DRG2
YWHAE
STAT3
RPS6
SPRY4
SNRPB2
E2F6
SSBP1
CLUAP1
LAMP1
COMMD2
H3C15
H3C14
S100A2
VIRMA
TACO1
YARS1
S100PBP
TEFM
UCKL1
WDR36
BNIP1
HEXA
C11orf49
ZNF212
METTL9
IRS2
GSTP1
SLC24A1
INTS14
TRIAP1
PEX3
ADAT2
MTF2
LRRC47
MANBAL
NDUFS3
KBTBD4
ZNFX1
JUNB
VPS25
AP3B1
WDR24
HMGB1
USPL1
EEF1A1
VANGL2
ST3GAL2
TMA16
LARS2
PLEKHM3
KANSL3
ADPRS
DPY19L3
SPATA24
H3C2
WWP2
RTN4
INTS12
GSTCD
MRPL44
IFI16
PYDC5
ALG10B
NEURL2
CTSA
TMEM101
EIF3G
ADPRHL1
STAT6
IPO4
FBXW2
ALKBH2
GTF2H2
GPRC5A
CCNL1
PSMF1
RPL32
TMEM256
MRPS23
NECAP2
SNX17
EIF2B4
DNAJC25-GNG10
DNAJC25
TOR1AIP1
DDX1
DNAJC24
DCDC1
TVP23B
DPP9
MRPL3
SNRPB
E2F4
NOC4L
DDX51
ARIH1
CCND1
PMPCA
ENTR1
TTPAL
VWA5A
DDX23
NDUFS7
DMAC1
SLC3A2
ACBD6
TMEM242
CTSC
ZNF391
AGMO
PAFAH2
TBL3
NFXL1
H1-3
GGNBP2
SIRT4
WDR11
RTF2
HTR5A
H4C6
ALG10
ARHGEF12
SREK1IP1
CWC27
SSBP2
NDUFC2-KCTD14
NDUFC2
EFNA1
RBM28
RAB18
AURKAIP1
RTEL1
TPR
ODR4
NCBP3
ATF3
ANKRD18B
CASC3
TRUB2
COQ4
ZC3H6
RCOR3
RPS8
POGZ
NOTCH2NLC
DPH7
RPS2
INO80C
RINT1
ZNF827
KBTBD6
INTS5
RPL26
TRIB1
SERPINA3
INTS1
DIAPH1
CCNC
COX16
KDM1A
DRAP1
C11orf68
CCDC107
IQSEC3
CHD1L
PRKAB2
ZNF830
CCT6B
RACK1
RAB7B
KCNMA1
SRFBP1
LRRC37A3
PIP5KL1
ZBTB45
MTAP
SLC33A1
DPP8
SH3GL1
EDC4
ZMPSTE24
DUS1L
ZSCAN25
MTERF1
PRKCE
FZD1
MNAT1
AVEN
CPLX2
CDC73
RRN3
THAP5
DNAJB9
GRAP2
CHI3L2
UCN2
SLC25A51
RBM45
H2AX
MUS81
RILP
COG2
RGPD2
RGPD1
FAM227B
DTWD1
UQCC1
UFSP1
MED23
TTC4
SEC16B
BAGE4
BAGE
BAGE3
GTF2I
C10orf88
RFXANK
BORCS8
DHX8
DUS2
DDX28
GOSR1
ANP32E
KNL1
TAF1C
PRADC1
CCT7
MRPL58
H2BC8
H2AC8
PRRG2
NOSIP
PSMD6
OTUD7B
CSNK1D
RCC1
ATXN2
H2BC14
H2AC14
TTC33
ATP5MF-PTCD1
ATP5MF
TRPC4AP
RPL11
ITGB3BP
EFCAB7
KMT2D
NOB1
COQ5
WWTR1
CFAP298-TCP10L
CFAP298
NOC3L
SUPT5H
H4C3
MRPL38
FAM133B
WWOX
BRD2
SRA1
BCL9
ORMDL3
HEXIM2
POLDIP3
CCDC86
TIGD1
EIF4E2
CPPED1
REX1BD
H1-0
RPL28
NFATC2
SOX10
BANP
BOD1L1
TUT1
PSMB6
NCOA3
PPP4R3B
ZNF106
SRSF6
ZNF253
LGI4
RPS27
ZER1
ANKRD40
ZBTB37
SLC35A3
MTHFS
ILVBL
RUVBL1
ZC3HC1
VPS72
ATF6
NSUN4
BICD1
CALR3
C19orf44
RPL23A
MRPS14
INPP5F
SNTB1
TTI2
EIF4A2
HNRNPA1L2
NBPF1
RFX3
ZSCAN22
ZNF554
MRM3
GLOD4
RPL41
TP53BP2
NHEJ1
SPIN2B
POLR2J
LSM8
LRRC37B
TFAP2B
RPL29
RPS3A
RPS14
MRPL39
FAM189B
WASHC5
NSMCE2
DDX19B
AARS1
SLC36A1
SNRPE
NMNAT1
LZIC
RPL13
FUS
CFAP20DC
CT45A3
EXD2
LDAH
SLC26A2
HOOK2
USP2
RNF216
TMEM115
UTP3
MCOLN1
SNX19
RPL13A
ANAPC5
AP4E1
CCDC88A
C16orf72
RPL7
RDH10
GPR176
ZNF708
EPHA3
ZNF56
VPS45
SDHAF3
ADNP
ABHD12
PYGB
AK3
PCOLCE
C16orf91
SEC13
CHCHD2
MFF
SEC22B
NAA20
TRA2B
TAF5
BBS1
CAAP1
SLC20A1
LTBR
COPS7B
CBWD2
NBN
MBTPS2
KCTD3
TENT4A
PARP4
ZCCHC4
YJU2
SART1
THOC5
TPK1
TBL1X
LIG4
ABHD13
NDRG1
PKIG
H3C8
DCUN1D5
TAF13
PBK
RBM14-RBM4
RBM14
CDH19
CWC25
LRRC59
MRPL48
HNRNPH1
MKRN1
INO80B
C8orf33
LSM5
NOTCH2NLB
AARS2
RAF1
NFE2L2
ZNF791
ZNF490
COQ8B
AVL9
LRP6
FAM228B
SF3B6
OSBPL11
ELOB
NDUFAF5
ESF1
NACA
TRIM46
KRTCAP2
CEP120
CAPS2
LDHA
LYPLAL1
NREP
PLEKHG5
POLG
POLR3B
FRG1
FANCD2
LAMTOR5
RMDN2
PCOTH
MIPEP
UNK
MTR
POLR2J3
TCTE3
ERMARD
ZNF564
RPL7A
MED22
RANBP6
COIL
MARCHF7
CSKMT
C11orf98
STEAP1B
SEC61A1
NOTCH2
CDC16
EIF1
VPS33A
RFFL
DEF8
ARMH3
IDH3B
GPATCH4
DDX5
MEOX2
DNM1L
ZNF45
REXO4
MRPL40
HIRA
SMG8
TOMM20
CRB1
GTF2IRD2B
H2BC12
H2AC12
ID1
INTS2
APH1B
LTBP1
SLC25A21
USP4
MAPRE2
MBNL2
NSA2
GFM2
STMP1
ZBTB40
LONP2
ABCC11
RBM17
PARP2
ZNF443
TUBA1C
PSMB4
FBXO38
SURF6
TTC26
CBX5
HNRNPA1
H2BC11
H2AC11
ERMP1
KDSR
H3-2
ZNF205
LOXL4
BOD1
LTA4H
DNM2
RPL5
PNPO
WIZ
LUC7L3
CALM2
GNPAT
C1orf131
ZNF76
ATP5F1E
STK4
ALDH9A1
SRSF5
CHD1
ATAD2B
SH3TC2
SPRY2
CT45A9
CT45A8
CT45A2
ZNF337
FBXL18
TIMMDC1
PRPF6
TAF3
IPP
GOLGA4
TMEM170A
SPRED1
IL6R
XKR7
MAGEA2B
MAGEA2
RPS21
DCAF8
H4C8
HEMK1
UBXN1
EFCAB2
MMAA
ZNF561
TAGLN2
ZNF609
MYPN
COMMD1
GRPEL2
CCT4
CLTC
TRMU
RPL37A
MLEC
SACM1L
DHX9
MCL1
PEX2
COA1
TMEM41A
SNRPD1
CTNNB1
SPRED2
H4C2
BORCS5
LARP1
RNF6
IFT46
PRNP
DUSP4
HIKESHI
RBSN
G6PC3
RPL35
ARPC5L
KIAA0895
H2BC13
H2AC13
DCLRE1B
AP4B1
CAPRIN2
ARGLU1
APP
CCDC90B
TIMM10
C12orf57
WASHC2C
GTPBP3
PPP2CB
CHML
PDE8A
GFOD2
CTHRC1
PTPN13
OPN3
BACE1
SPRYD4
ACOX3
TRMT44
DIDO1
GID8
BUD13
SLC35A4
APBB3
ABCA3
OR2L13
LIFR
MRPS15
SLC35E1
THOC3
MDM4
SEPSECS
DISC1
SFPQ
DYNLL1
H2BC17
H2AC17
SPIDR
ZNF282
PKD2L2
SRSF9
FLRT3
FXYD3
HMCN1
ARL14EP
EIF2B3
COMMD4
RPL30
TMEM167B
MC1R
BAIAP2
ESD
ABCF2
TRAPPC3
TMEM199
POLDIP2
RPL12
LRSAM1
SH2B1
ALKBH3
BMS1
GABPB2
SRSF2
MFSD11
MAPKAPK5
ZBTB17
SOD2
WTAP
THEM4
ZSWIM4
ARMC8
DNAJB1
KDM8
SRRM1
TECR
ZNF846
CNP
TMEM106B
SUPT20H
GRHPR
SLC6A15
EMP1
FOXJ3
PDE4DIP
MANF
SLC9B1
NECAP1
H3C4
TAF10
KLHL9
ARCN1
INPPL1
UBAP1L
PANK4
RPS28
NDUFA7
C18orf25
MTRF1
C2orf42
PIKFYVE
ABHD2
ANKRD13D
SLC25A28
ATF1
HM13
RGL1
ARPC5
INTS6
ZNF579
USP28
DAB2
SNTB2
NAA16
GEM
PSMD11
TMEM186
PMM2
UTP25
GNAI2
SRSF7
ADAM17
NR3C1
TRMO
H2BC4
H2AC6
NAGPA
GPR89A
RBM7
C11orf71
BLOC1S2
MTMR9
FAM207A
CDC25C
FAM53C
TSN
MRPS18C
HELQ
CCDC59
ZNF513
TSSK6
NDUFA13
MCAT
ABCB10
ATP6V0D1
MAT2A
SLTM
MTMR2
FNIP1
FGFBP3
DGAT1
LRCH4
FBXO24
SMG7
PCIF1
DPH6
NDUFAF6
PLGRKT
B9D1
H4-16
BCAR3
ZBTB38
CASP7
TIMP1
CCDC174
KRR1
MRPL1
TIGD6
HMGXB3
SNF8
CIAO2B
CES2
RSL24D1
BTG1
SLC39A6
SREBF2
ZC3H11A
SLMAP
SLC30A6
LMAN2
ZNF658
ARF4
POMP
MTG1
DMTF1
STX6
YIPF6
RGS2
CCDC92B
BOC
ACTL6B
KCTD5
RPL34
RMND1
ARMT1
ZNF696
PIGL
EMC4
AARSD1
YAE1
EEF2K
CLASP2
LPCAT3
ZNF506
CEMIP
A2M
TCEA2
SPATC1L
TERF2
SLC39A13
MTIF2
GARS1
ZFP62
USP3
MAK16
TMED2
MKRN3
ARHGEF7
DELE1
PDE4A
JAGN1
NR4A1
SHROOM1
AMOTL2
AHCTF1
MRPL20
SLC38A9
MKRN2
ZNF3
MRPL53
SRP9
CNEP1R1
HIF1AN
ATXN7L2
UBOX5
FASTKD5
IMPDH2
AVPI1
DPH5
BPTF
PTPN1
CAMTA2
NQO1
MAGEA3
AP2B1
SSNA1
ANAPC2
SP1
FAM3C
KLHL12
ACBD3
SLC17A5
R3HCC1
PIGV
SELENOT
AFF4
NTMT1
SRI
APOD
PEMT
WDPCP
MDH1
PSMD3
EIF3C
DEDD
KIF15
KIAA1143
FAM149B1
ECD
RPL6
RANBP2
GOLGA1
MLST8
ACAD9
AHCYL1
SPATA17
GPATCH2
EEF1AKMT2
COX20
MPV17
GPATCH3
ANKRD46
PDE7A
STXBP3
MRNIP
UBL7
RPL22
MAGOH
NOXA1
RRP8
ILK
SUGCT
MPLKIP
POLR3E
NVL
NAA60
MAPK1IP1L
FBXO22
NCOA7
ANKRD12
R3HDM2