ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◣ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
ZNF335
ZP4
RABL2B
MAPKAPK5
PSMD1
IPO13
RABL2A
NME6
VEZT
FGD6
HES1
NEUROG3
RWDD1
HES3
CACTIN
VDAC2
TAOK3
SUDS3
NUP85
ZNF503
POLR3F
DZANK1
HSPA9
IGFBP2
RPL21
ATP5MG
DYNC1LI2
NVL
VTI1B
TBCK
AIMP1
FAM187A
EFTUD2
CCDC103
ARHGAP10
PAK1IP1
C6orf52
DCTN1
BLCAP
NUP205
POLR2E
ACTR10
SRD5A1
REXO1
SKP1
CDX2
DPH6
PMAIP1
C19orf48
NCLN
STAM2
PSMG2
CEP76
EXOSC5
BCKDHA
UPF2
STAM
MRPS7
GGA3
FRG2C
SLC35B1
PES1
PNO1
HADHB
HADHA
TSN
GOSR2
SUPV3L1
INSM1
RBBP5
LYRM4
FARS2
FARSB
SEC61B
ALG2
ANAPC7
CAPRIN1
ZNF576
IRGQ
SKIL
IQCG
RPL35A
RBKS
BABAM2
ZDHHC1
LZTS1
PCBP1
PSMD12
TSNAX
TMED1
MRPS5
ATOH1
SART3
ISCU
GOLGA5
VARS1
NDUFA4
SF3B3
COG4
ICE1
COX7A2L
TTC8
EIF4ENIF1
PDAP1
BUD31
PAF1
RPS12
RPS23
ATP6AP1L
SMC2
BNIP3
PI4KB
OSGEP
APEX1
RBBP7
MALRD1
GADD45G
PANK4
HES5
USP1
ZRANB2
HOXA4
TM9SF1
NEUROG1
LEFTY2
TTYH1
KDM8
FAM104A
C17orf80
TESC
RPS27A
CLHC1
DUX4
SELENOF
HS2ST1
NFKBIL1
DDX39B
ATP6V1G2
CCDC33
UFM1
XPNPEP3
ST13
PRRX1
UBE2I
PAX6
ADK
AP3M1
FZD8
RPS29
LRR1
ST18
PTGES2
CPSF4L
RABGGTB
DLL4
PHOX2B
PROSER1
NHLRC3
PDHB
CR1L
HOXB1
NEUROD1
HOXB3
HOXB4
FRG2
BICRA
HHIP
APOM
BAG6
PNKD
RASL10B
HNRNPA2B1
CBX3
PIN4
TRABD2B
SULF1
NOXO1
GFER
TAF9
RAD17
AK6
GTF3A
CNTN1
NUTM2D
NEDD9
ERRFI1
RYBP
STRA6
PDPN
SLC10A2
PDE6B
MRTO4
EMC1
DDX3X
SEC11C
MYRIP
SOX12
RGS12
HOXD3
EPHA5
TMEM120B
DLX4
STK36
RNF25
CSRNP1
ARHGAP11A-SCG5
ARHGAP11A
NEK3
KAZALD1
OR6B2
NDUFA10
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
PRUNE2
BFSP1
LIMCH1
METTL11B
COMMD1
CCT4
GADD45GIP1
KDM2B
LRATD2
ZFX
CNTN4
HES7
RPN1
PDHX
APIP
TPRA1
FJX1
TTLL6
TLE4
LPIN1
HNF1A
OTX1
GFRA3
CACNA1D
RPH3A
EIF2S3
SYBU
TIGD1
EIF4E2
ABCB5
SPACA1
TMEM107
KIF26A
RAI14
PCBD2
ZGPAT
ARFRP1
OAZ3
MRPL9
BRWD1
WDR59
CNPY2
UPF3A
LRIG1
CLGN
SOX11
RPL7
RDH10
SUCLG1
ANKLE2
PDGFA
TCF7L2
LBX1
REV3L
SOCS3
CLDN2
HOXA3
CDC73
DMBX1
RARA
AXDND1
HNRNPD
DCTN3
ARID3C
REC8
WBP1L
TBC1D8
ZMAT4
SALL1
TNC
GTF3C4
DDX31
CCN1
DHRS3
ZNF383
BAHCC1
CAMTA1
PDE12
CCDC200
HOXB8
HOXB7
DSCAML1
ECM1
HOXA2
DBX1
CATSPERG
LIN28B
CDX1
GORAB
BAIAP2
FGFR4
MSX2
MAST2
XIAP
VOPP1
C15orf61
CPN2
RADIL
ANK2
SLC39A6
PPM1B
PRDM12
TSHZ1
ZADH2
KIF21B
GPR176
RBPJ
STOML2
ADAMTS15
CD99L2
TMEM131L
USP17L20
USP17L22
LIG3
TMPPE
GLB1
ALDH1A2
CDC42EP2
BAZ2B
CYP26A1
PACSIN2
ZSWIM6
PIPOX
QPRT
ZNF746
ID2
TPM1
GAD2
ABLIM3
KDM6B
KLF17
MYLK4
CPLX1
EBF3
OR8J1
DHX32
HMGN1
TBX3
METTL24
SOX21
HOXA5
LRRC15
FAM107A
DST
RPS10-NUDT3
RPS10
RPS24
POLR3A
SCARF1
SLC22A2
FABP5
LZTFL1
ONECUT2
FGF19
CEMP1
ERCC1
PKNOX2
ALKBH6
SYNE4
EIF4H
CPVL
CHN2
LINGO1
TLE2
SLC7A5
MSX1
ALKBH5
SOX6
MTCH2
RNF138
FBLN1
JAKMIP1
LHX2
ZFHX4
ADGRL2
SMC6
GEN1
TRAP1
ZCWPW1
MEPCE
NEBL
TBL1XR1
YAP1
EIF2S1
ATP6V1D
SPCS1
GLT8D1
SALL4
ANTKMT
METRN
ZNF775
KLF6
RUNX1T1
GREB1
ID3
TLE1
PHC2
SPOCK2
KMT2A
HOXA6
PAX3
ITPRIP
CYP51A1
H3-3A
KMT2B
NUP210
C12orf73
TPST2
DAAM1
STMN1
MEX3B
KRT20
NR6A1
RPRM
BBS9
TLE3
HEY1
CNKSR3
HOXC4
MUSTN1
ITIH4
KLHL15
PIGR
MEIS3
DAPL1
STK38
HSPB8
CASC3
SRGAP3
SEMA6D
EIF4E3
SNCG
MMRN2
KEAP1
HOXD1
TUBB3
TFDP2
PAX4
ACOT2
CA4
ADM
HOXC5
CS
LRRC10B
CUEDC1
MEF2C
SERPING1
TPCN1
FGF2
TMEM70
ELOC
FBXO10
MEIS2
ALOX5AP
TMEM14A
PCDH11Y
TCF20
IL37
SRSF11
LRRC40
PARP16
TANC1
ENO1
USP17L21
USP17L12
USP17L11
USP17L18
HOXB9
CER1
RARB
LIN28A
NKIRAS1
NR1D2
ASXL3
TAGLN3
LAPTM4A
IFI16
TCF4
CEP97
PLAGL1
MEOX1
ZFHX3
TYRO3
HOXA9
HOXA7
MARCHF7
SP5
PCBP4
C1orf141
BNIP2
USH1C
ME2
PANK2
ELMO1
PCDH18
RGS16
LDLRAD3
CSTF2T
SEMA4B
IP6K3
ERI1
HRK
LYPD6B
PLEKHA6
SCN2A
FOXD1
BTF3
N4BP3
M1AP
ABAT
NUTM2F
DUSP6
NELFA
GPR157
SLC25A33
PJA2
IGFBP6
CDCA7L
C16orf91
FOXP2
ARID3B
NFE2
DNAJB7
SOAT2
GATA4
MTRNR2L2
MSH3
DHFR
MRPL38
TRIP10
GPR108
SMPDL3A
CCNDBP1
POP5
GRSF1
NR2F1
ARSG
SPATC1L
FOXP1
MTRNR2L1
MRPL34
ABHD8
RASSF2
IER3
FLOT1
EVA1A
NDUFS7
SH2B1
FGR
PKDCC
PLEKHO2
INAFM2
HOXA1
MBD2
CBX4
SH3BP2
RNF149
CITED2
ZNF608
LYL1
KAT6B
HUS1
HEXIM2
ETFBKMT
MTRNR2L8
DDA1
HSPA1B
ARID5A
ABCG2
NEO1
ARHGAP24
KCNAB2
JAK3
PDZRN3
SP2
PARK7
CCPG1
C15orf65
FRAT2
RPS6KA1
ID1
SEC14L1
SASH3
C11orf24
MRS2
SLCO4C1
ATG16L2
HOXC6
NCOR2
KDM3A
GRHL3
PRDM10
UBXN10
PAX8
CCDC88A
SPECC1
LYPD1
ARHGEF10L
NADK
NCOA2
FGFRL1
DGKZ
WDR6
NBEAL2
BIN2
SNX1
CIAO2A
SKIV2L
NELFE
SIRT4
NKD1
EFHD2
FAM110A
TMEM104
NAT9
LPCAT3
MTMR4
DIAPH1
NBPF1
EMP3
CCDC114
ZNF76
TRAF4
PLEC
USP15
SNX3
LRRN4
WNT10B
RARG
MEF2D
KMT2E
MXI1
LNPEP
CABIN1
PPP1R18
RASSF5
SPG7
CDC42EP3
DENND2D
CCDC174
ZNF367
DIAPH3
IMPG1
CBFA2T3
SHOX2
RSRC1
POR
ZCCHC3
NFKBIA
IQCH
AAGAB
ZNF414
CD38
INAVA
ING1
VAV1
HEBP2
TRERF1
BCL3
CMTR1
TUBB
RAC2
ATP23
CNOT2
LRIG3
FTL
IQGAP2
PCNA
SYNPO
POLR2J3
GPAA1
EXOSC4
RNASEH2B
MINDY2
OTUD7B
NTRK2
PKN2
PKM
H6PD
PPIB
RXRA
TNFRSF19
RAB11B
NDFIP2
COL23A1
MAPKAPK3
SHB
ANKRD1
SMARCD2
SMAD3
GALNT10
PLCB2
USP3
PDE4D
ADCY7
PCTP
IFRD2
PEX14
DFFA
YTHDF2
FAM120B
CEP41
HMGCS1
PRDM1
ARHGAP4
LRCH4
FBXO24
CFD
MRPS24
SLC35E2B
DLG2
HESX1
PXYLP1
TBRG4
ADORA2A
HIBADH
ARIH2
TXNRD1
RNF139
SH3TC1
CYCS
ZDHHC4
ZNF740
CSAD
RNF166
IGF2BP3
SP7
DYNLL1
MECOM
SOD2
PIK3AP1
KANSL3
FER1L5
SBF1
ARID2
LTBR
DPP9
ANKMY1
ERI3
CLIC4
NR2C1
CPT1A
KCTD6
ZBTB25
ZBTB1
DTX4
AKIRIN1
IL6R
PRSS56
SEC22B
DTNB
TTI2
ATXN1L
SLC35E2A
CYTH4
AGO1
MYEOV
FOS
PTGES3
LRGUK
RBL2
HAND1
HOXB5
SRPRA
FCHSD2
MBD6
DDIT3
TMEM222
SSX2IP
RND3
FAF2
NXPH4
C12orf29
ZNF3
ARHGEF1
UPP1
CALM2
ZNF341
DMRT3
CD164
CTTN
SLC39A13
SLAMF8
TYROBP
ANKRD13D
SLC25A6
TRMT6
MCM8
TBX2
RNF103-CHMP3
RMND5A
AHDC1
SNAPC3
BAZ1B
SPATA25
LAPTM5
PRRC2A
AIF1
USP42
MYADM
NOTCH2NLA
UNC13D
STX18
SBNO2
CLTC
SEMA4D
PIP4P2
ARHGAP45
MAP2K1
VANGL2
MAD1L1
CXXC4
SYNJ2
ZNRD2
MTF2
KCNH2
FAM89B
EHBP1L1
RXRB
IL21R
PPCDC
MTCH1
DGAT2
CENPH
SLC43A3
SEH1L
DNAJB8
ZNF25
RNF125
H2BC5
H1-4
PHF19
RASGRP2
ERLIN2
PEAK3
THRAP3
COX5A
MRPS31
USP17L15
NAGLU
NOTCH2NLC
MIDN
PDE1B
MAP1S
KRI1
CDKN2D
EPM2A
MYO10
RAD50
PIKFYVE
PKNOX1
ZBTB17
KAT6A
SDE2
ARL4A
UROD
HECTD3
BHLHE40
GATA3
NR1D1
HSD17B8
GPSM3
PSMD3
FBXO41
SMPD1
ZNF595
RFESD
ADAM17
STRADA
WT1
CCDC88B
ARHGEF38
RWDD2A
PGM3
FMNL1
TMEM123
MC1R
PRKCD
MTRF1L
WTAP
BCAT2
LSM5
AVL9
MAGEF1
GRK6
CPNE5
RCOR1
NUBP1
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
SLC39A7
MYCBP2
ZNF318
NTAQ1
ASNS
USPL1
HMGB1
H3C12
H2BC17
H2AC17
PEX3
IFNGR1
ADAT2
TCHP
ATAD3B
UBL7
SCMH1
DYNLT1
DONSON
VPS37C
C1orf159
SH3BGRL3
FXYD2
GPX4
NOTCH2
OR2L13
OR2AJ1
GPATCH8
NGRN
MCU
PNRC2
SACM1L
CISH
TIGD5
EEF1D
CBWD6
BNC2
EOLA2
RER1
MORN1
RGL1
ZNF436
SCAMP2
DPEP1
ARF3
OST4
CAPG
RPL17-C18orf32
RPL17
C18orf32
RUNX1
RNPEPL1
GRIP1
ARHGAP27
BUD13
KLHL25
LIX1
NIBAN2
DDX23
LGALS1
FAM227B
DTWD1
YBX2
GABRB2
ARHGEF18
NCBP2AS2
NCBP2
SPIN1
ATAD3A
USP21
NOTCH2NLB
KIF1C
INCA1
TAF12
KMT5A
CCDC59
PGK1
CYB5R4
CBX5
HPF1
DENND1A
TDP2
CNPY3
CNOT6
ACOT13
SCAF1