ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584304 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◣ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
NEUROG2
RABL2A
NUP205
ZP4
POLR3F
DZANK1
PSMD1
NME6
NEUROG3
MAPKAPK5
TBCK
AIMP1
NVL
HSPA9
POLR2E
NUP85
ARHGAP10
CACTIN
IPO13
HES3
DYNC1LI2
ZNF503
BLCAP
PES1
RWDD1
TAOK3
SUDS3
RPL21
FARSB
C19orf48
FAM187A
EFTUD2
CCDC103
VDAC2
GOSR2
PAK1IP1
C6orf52
MRPS7
GGA3
VTI1B
NCLN
SART3
ISCU
ACTR10
DCTN1
PSMG2
CEP76
PNO1
SEC61B
ALG2
SF3B3
COG4
HES1
EXOSC5
BCKDHA
SUPV3L1
UFM1
SKP1
TSN
IQCG
RPL35A
ATP5MG
PCBP1
TSNAX
PSMD12
ANAPC7
RPS27A
CLHC1
UPF2
STAM2
SLC35B1
STAM
LYRM4
FARS2
COX7A2L
REXO1
DPH6
SRD5A1
CDX2
ZNF576
IRGQ
ZRANB2
HADHB
HADHA
TMED1
RPS12
RBBP5
TTC8
VEZT
FGD6
SELENOF
HS2ST1
PI4KB
SMC2
CAPRIN1
MRPS5
FAM104A
C17orf80
XPNPEP3
ST13
ATOH1
PAF1
OSGEP
APEX1
IGFBP2
NDUFA4
RBKS
BABAM2
VARS1
LZTS1
EIF4ENIF1
GADD45G
GOLGA5
INSM1
ADK
AP3M1
PMAIP1
CCDC33
FRG2C
MALRD1
PDAP1
BUD31
USP1
RPS23
ATP6AP1L
RABGGTB
PROSER1
NHLRC3
PTGES2
ZDHHC1
TM9SF1
ICE1
DUX4
NFKBIL1
DDX39B
ATP6V1G2
LEFTY2
HOXA4
PHOX2B
KDM8
NEUROG1
SEC11C
BICRA
RPL7
RDH10
APOM
BAG6
CR1L
PIN4
BNIP3
RPS29
LRR1
SUCLG1
CACNA1D
STK36
RNF25
SULF1
ST18
ARHGAP11A-SCG5
ARHGAP11A
TMEM120B
PAX6
ABLIM3
KRT20
COMMD1
CCT4
CDX1
TAF9
RAD17
AK6
DLL4
OAZ3
MRPL9
FZD8
SLC10A2
OR6B2
NDUFA10
NEUROD1
TPM1
PANK4
HES5
CLDN2
EPHA5
PRUNE2
TCF7L2
TTYH1
LRATD2
CPSF4L
IGFBP6
SOAT2
CNTN1
UBE2I
DMBX1
DCTN3
ARID3C
SALL1
C16orf91
TPRA1
RPN1
CDC42EP2
GADD45GIP1
NUTM2D
FRG2
GORAB
HOXB3
HOXB4
SMC6
GEN1
ZNF383
PDE6B
MUSTN1
ITIH4
HOXD3
RBBP7
ERRFI1
PRRX1
TBC1D8
SPACA1
PDE12
WDR59
CCN1
SKIL
TESC
RAI14
DLX4
GAD2
SYBU
DSCAML1
MRTO4
EMC1
HHIP
CCDC200
FJX1
TIGD1
EIF4E2
HOXB1
HOXA3
PDHB
HOXA2
ALKBH5
CNPY2
FGF19
PAH
ASCL1
GTF3A
HES7
METTL24
KDM2B
PCBD2
NEK3
SALL4
ZNF746
KIF26A
PDHX
APIP
HNRNPA2B1
CBX3
ZFX
EIF2S3
RBPJ
PTGR1
CATSPERG
EVA1A
STOML2
ADGRL2
RPH3A
ZGPAT
ARFRP1
REV3L
STRA6
TMEM107
PDPN
CDON
HOXB8
HOXB7
KLF17
EIF2S1
ATP6V1D
ANK2
METTL11B
NOXO1
GFER
GFRA3
TSHZ1
ZADH2
GTF3C4
DDX31
AXDND1
LRIG1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CYP51A1
TLE4
BFSP1
TMEM14A
MYO10
CAMTA1
CLGN
MRPL38
THRA
RPS24
POLR3A
HNF1A
VOPP1
REC8
SNCG
MMRN2
OTX1
HOXC5
ID1
CDH16
HSPA1B
NFE2
CNTN4
DHX32
TMPPE
GLB1
ADM
RARB
LRGUK
MSX1
LIG3
LBX1
P2RX6
MEIS3
MEIS2
STK38
LIMCH1
DDX3X
LIN28B
PCDH11Y
SOX6
TPST2
ABCB5
PAX3
TLE3
AGO1
HOXA5
LRIG3
TLN1
CREB3
ALOX5AP
CD99L2
CPLX1
CPN2
DAAM1
SOX21
CSTF2T
TRABD2B
TCF4
QPRT
EIF4E3
ZFHX4
ZNF367
PANK2
TYRO3
H3C12
H2BC17
H2AC17
RARA
KAZALD1
SOX12
SH2D3C
BNIP2
RGS12
ANTKMT
METRN
BRWD1
HSPB8
USP17L20
USP17L22
PJA2
PLEKHA5
PAX8
GAS1
DAPL1
C12orf73
DLG4
ACADVL
PNKD
SOCS3
TTLL6
PLAGL1
PRDM12
PCBP4
RPS10-NUDT3
RPS10
SLC44A3
USP17L21
USP17L12
USP17L11
USP17L18
SNX1
CIAO2A
TTI2
NEDD9
FAM107A
NELFA
ID2
BBS9
CDCA7L
CDC73
ANKLE2
ID3
DUSP6
SP5
MYLK4
FOXP2
ARID3B
DNAJB7
TLE2
GATA4
TMEM70
ELOC
MYRIP
MTRNR2L2
MSH3
DHFR
TRIP10
GPR108
SMPDL3A
CCNDBP1
POP5
GRSF1
NR2F1
ARSG
RUNX1T1
SPATC1L
CYP26A1
FOXP1
MTRNR2L1
HOXC4
KMT2A
MRPL34
ABHD8
TBX3
MSX2
RASSF2
IER3
FLOT1
LPIN1
NDUFS7
SH2B1
SPCS1
GLT8D1
FGR
IFI16
PKDCC
PLEKHO2
INAFM2
HOXA1
MBD2
CBX4
DBX1
SH3BP2
RNF149
UPF3A
CS
CITED2
ZNF608
LYL1
KDM6B
KAT6B
HUS1
DHRS3
HEXIM2
ETFBKMT
MTRNR2L8
LIN28A
DDA1
ARID5A
ABCG2
SRSF11
LRRC40
TLE1
NEO1
ARHGAP24
ZFHX3
KCNAB2
JAK3
PDZRN3
SP2
PARK7
CCPG1
C15orf65
HNRNPD
FRAT2
RPS6KA1
SEC14L1
SASH3
C11orf24
MRS2
SLCO4C1
PHC2
ATG16L2
HOXC6
KIF21B
NCOR2
KDM3A
GRHL3
PRDM10
SLC7A5
UBXN10
CCDC88A
SPECC1
LYPD1
ARHGEF10L
NADK
ERCC1
NCOA2
FGFRL1
DGKZ
ENO1
WDR6
NBEAL2
BIN2
SKIV2L
NELFE
SIRT4
NKD1
EFHD2
FAM110A
TMEM104
NAT9
LPCAT3
MTMR4
DIAPH1
NBPF1
EMP3
CCDC114
ZNF76
TRAF4
PLEC
MEF2C
USP15
SNX3
LRRN4
WNT10B
RARG
MEF2D
KMT2E
MXI1
LNPEP
CABIN1
PPP1R18
RASSF5
SPG7
CDC42EP3
DENND2D
CCDC174
DIAPH3
IMPG1
CBFA2T3
SHOX2
RSRC1
POR
ZCCHC3
ZSWIM6
NFKBIA
IQCH
AAGAB
ZNF414
CD38
INAVA
ING1
VAV1
HEBP2
TRERF1
BCL3
CMTR1
TUBB
RAC2
ATP23
CNOT2
FTL
IQGAP2
PCNA
SYNPO
POLR2J3
GPAA1
EXOSC4
MEOX1
RNASEH2B
MINDY2
OTUD7B
NTRK2
PKN2
PKM
H6PD
PPIB
RXRA
TNFRSF19
RAB11B
NDFIP2
COL23A1
MAPKAPK3
RYBP
SHB
ANKRD1
SMARCD2
SMAD3
GALNT10
PLCB2
USP3
NKIRAS1
PDE4D
ADCY7
PCTP
IFRD2
PEX14
DFFA
YTHDF2
FAM120B
CEP41
HMGCS1
PRDM1
ARHGAP4
LRCH4
FBXO24
CFD
MRPS24
SLC35E2B
DLG2
HESX1
PXYLP1
TBRG4
ADORA2A
HIBADH
ARIH2
TXNRD1
TUBB3
NR1D2
RNF139
SH3TC1
CYCS
ZDHHC4
ZNF740
CSAD
RNF166
IGF2BP3
SP7
DYNLL1
MECOM
BAIAP2
SOD2
PIK3AP1
KANSL3
FER1L5
SBF1
ARID2
LTBR
DPP9
ANKMY1
ERI3
CLIC4
SEMA6D
NR2C1
CPT1A
KCTD6
ZBTB25
ZBTB1
DTX4
AKIRIN1
IL6R
PRSS56
SEC22B
DTNB
ATXN1L
SLC35E2A
CYTH4
MYEOV
FOS
PTGES3
RBL2
HAND1
HOXB5
SRPRA
FCHSD2
MBD6
DDIT3
TMEM222
SSX2IP
RND3
FAF2
NXPH4
C12orf29
ZNF3
ARHGEF1
UPP1
CASC3
CALM2
ZNF341
DMRT3
CD164
CTTN
SLC39A13
SLAMF8
TYROBP
ANKRD13D
SLC25A6
TRMT6
MCM8
TBX2
RNF103-CHMP3
RMND5A
AHDC1
CSRNP1
SNAPC3
BAZ1B
SPATA25
LAPTM5
PRRC2A
AIF1
USP42
MYADM
NOTCH2NLA
UNC13D
STX18
SBNO2
CLTC
SEMA4D
PIP4P2
ARHGAP45
MAP2K1
VANGL2
MAD1L1
CXXC4
SYNJ2
ZNRD2
MTF2
KCNH2
FAM89B
EHBP1L1
RXRB
IL21R
PPCDC
MTCH1
DGAT2
CENPH
SLC43A3
SEH1L
DNAJB8
ZNF25
RNF125
H2BC5
H1-4
PHF19
RASGRP2
LYPD6B
ERLIN2
PEAK3
THRAP3
COX5A
MRPS31
USP17L15
NAGLU
NOTCH2NLC
MIDN
PDE1B
MAP1S
EIF4H
KRI1
CDKN2D
EPM2A
RAD50
PIKFYVE
PKNOX1
ZBTB17
KAT6A
SDE2
ARL4A
UROD
HECTD3
BHLHE40
GATA3
NR1D1
HSD17B8
GPSM3
PSMD3
FBXO41
SMPD1
ZNF595
RFESD
ADAM17
STRADA
ITPRIP
WT1
CCDC88B
KEAP1
ARHGEF38
ACOT2
RWDD2A
PGM3
SCARF1
FMNL1
TMEM123
CPVL
CHN2
MC1R
PRKCD
MTRF1L
WTAP
BCAT2
RASL10B
LSM5
AVL9
MAGEF1
GRK6
CPNE5
RCOR1
NUBP1
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
SLC39A7
MYCBP2
ZNF318
NTAQ1
ASNS
USPL1
SLC22A2
HMGB1
PEX3
IFNGR1
ADAT2
TCHP
ATAD3B
UBL7
SCMH1
DYNLT1
DONSON
VPS37C
C1orf159
SH3BGRL3
FXYD2
GPX4
NOTCH2
OR2L13
OR2AJ1
MAST2
GPATCH8
NGRN
MCU
PNRC2
SACM1L
CISH
TIGD5
EEF1D
CBWD6
BNC2
EOLA2
RER1
MORN1
RGL1
ZNF436
SCAMP2
DPEP1
ARF3
OST4
CAPG
RPL17-C18orf32
RPL17
C18orf32
RUNX1
RNPEPL1
GRIP1
ARHGAP27
BUD13
KLHL25
LIX1
NIBAN2
DDX23
LGALS1
FAM227B
FABP5
DTWD1
YBX2
GABRB2
ARHGEF18
NCBP2AS2
NCBP2
SPIN1
ATAD3A
GPR176
USP21
NOTCH2NLB
KIF1C
INCA1
TAF12
KMT5A
CCDC59
PGK1
CYB5R4
CBX5
HPF1
DENND1A
TDP2
CNPY3
CNOT6
ACOT13
SCAF1
RRAS
JAKMIP1
NINJ2
SLC9A3R1
PTEN
MDC1
KLLN
RAP1GAP2
NUDT15
TMEM65
SYPL1
NANP
YY1AP1
MT2A
DAP3
C12orf65
UBE2L3
RIMBP3C
RIMBP3B
PCMT1
CDS2
PTP4A3
NMNAT1
LZIC
CEP135
GADD45A
ASB1
ARID1A
TSPAN4
POLR2L
GOLIM4
SPTBN1
ATG5
APBB1IP
CACYBP
CCNL1
RNF130
GYPC
GBX1
SERTAD2
PTDSS1
MTERF3
MFN2
ZCCHC24
GSPT1
EIF3D
EHD1
C21orf91
FOXD3
SNUPN
POU2F1
LTB4R
LTB4R2
LANCL2
EIF5
CIDEB
UNK
POLG
HYLS1
SREBF2
SQSTM1
TRAP1
PSMF1
HMGCL
PAM
FLI1
ZCWPW1
MEPCE
MTMR1
ZNF219
TKFC
SGK1
DDB1
ADAP1
RPLP1
RITA1
DDX54
ASH1L
GTF2H3
EIF2B1
IQCE
BRAT1
BANP
CTSC
DISP3
GFRA1
ASXL3
TAS1R1