ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584311 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◣ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

DUX4
ZNF335
RABL2B
RABL2A
POLR3F
DZANK1
PSMD1
IPO13
RPL21
RWDD1
NUP85
DYNC1LI2
MAPKAPK5
NME6
VTI1B
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
CACTIN
VDAC2
HSPA9
NVL
PSMG2
CEP76
SRD5A1
NUP205
REXO1
C19orf48
TBCK
AIMP1
MRPS7
MIF4GD
GGA3
LYRM4
FARS2
HADHB
HADHA
STAM
TSNAX
POLR2E
GPX4
ATP5MG
SLC35B1
GOSR2
S1PR4
NCLN
EXOSC5
BCKDHA
UPF2
SART3
ISCU
DCTN1
LOC102724770
DGCR6
FRG2C
FARSB
NNAT
BLCAP
STAM2
ZNF503
PES1
HOXA3
HOXA4
PPP1R1B
NDUFA4
GOLGA5
ZNF576
IRGQ
PNO1
SEC61B
ALG2
DPH6
SKP1
TSN
PSMD12
RPS23
ATP6AP1L
ACTR10
USP1
SMC2
ZRANB2
TTC8
TMED1
SFI1
EIF4ENIF1
PAK1IP1
C6orf52
RBBP5
UFM1
ARF1
RABGGTB
COX7A2L
SUPV3L1
CAPRIN1
NFKBIL1
DDX39B
ATP6V1G2
PI4KB
PIP4P1
OSGEP
APEX1
RPL35A
IQCG
LMLN
XPNPEP3
ST13
DNAJB7
ANAPC7
C6orf47
BAG6
APOM
ICE1
RPS12
FAM104A
C17orf80
SF3B3
COG4
PCBP1
PDAP1
BUD31
MRPS5
VARS1
RBKS
BABAM2
POU2F2
ZFHX4
FRG2
NEUROG1
HES1
WNT1
SELENOF
HS2ST1
PROSER1
NHLRC3
GRIK2
ADK
AP3M1
RPS27A
CLHC1
ABCG2
UBE2I
RND3
SEC11C
NEUROG2
ICMT
HES3
FGF19
UNKL
C16orf91
BICRA
LRATD2
PAF1
RPS29
LRR1
G6PC2
CALCOCO1
OR6B2
NDUFA10
FZD8
ARHGAP11A-SCG5
ARHGAP11A
RPL7
RDH10
MSX1
TM9SF1
IPO4
TSSK4
TAF9
RAD17
AK6
NFIA
PDE6B
MRTO4
EMC1
DMRT3
SERINC5
STK36
RNF25
HSPA1B
COMMD1
CCT4
NEUROD1
MUC20
RAB11FIP1
PTGES2
TMEM120B
HOXA5
CDPF1
GNG12
SYNGR4
FXYD2
DSCAML1
RHBDD3
EWSR1
FABP7
SMPDL3A
PIN4
ANK2
TLE1
BRINP1
PLAGL1
ITGB6
KCNN4
PRDM13
HOXB3
HOXB4
FGD3
SUCLG1
LBX1
SOGA3
KMT2A
NCOR2
SYNPO
CNPY2
TMEM70
ELOC
LAMA4
PAX3
ZGPAT
ARFRP1
HOXC6
HOXC5
PARP11
EIF2S3
MEIS2
SLA
CLDN11
RTL8B
GTF3C4
DDX31
SPTBN1
HSPA6
ZNF608
PDE1A
ARHGAP24
SPRR1A
TMEM72
PDE12
ETS1
ANKLE2
SEMA4D
PIPOX
SEC22B
PDHB
USP17L21
USP17L20
USP17L12
USP17L22
TNP2
PRM3
PRM2
PRM1
CABP7
OAZ3
MRPL9
CYP26A1
HMX2
BUB3
SH3BP5
C5orf63
BNIP3
ALKBH5
FBXL18
ACTB
PALM2AKAP2
PDHX
APIP
SMURF1
PCBD2
CHODL
EVX2
FRMD4A
TMEM107
LRRC10
ERRFI1
PDE1B
NR2F1
GDF10
COL17A1
RAI14
KCNK16
LIMK2
GFRA1
NFIB
TLE2
TLE4
CS
GSX2
ARID3C
DCTN3
MRPL3
BBS9
SKIL
POP5
TPO
ACSS3
RBBP7
VAV3
GADD45GIP1
C1orf105
CPA1
HOXD3
KBTBD8
DTX4
HOXA1
HOXA2
DDAH1
CCN1
SLC2A9
SMIM28
CERCAM
SNCG
MMRN2
GALNTL6
TMEM275
PBX2
GPSM3
AGER
VEZT
FGD6
CCDC200
RPL34
FOXB2
MYRF
FOXP2
USP17L13
USP17L11
USP17L18
MEF2C
USP17L10
LZTS1
GORAB
MYADM
KITLG
RFX2
QPRT
PGLYRP1
IGFL4
BECN2
FAM118A
AGMO
GLRA1
ZSWIM1
SPATA25
NEURL2
CTSA
EAPP
SPCS1
GLT8D1
PDZRN3
DLG2
PDE4DIP
LAMB4
PKHD1
ID2
RARB
NEUROG3
DUSP29
MBTPS1
CDX2
LARP7
ARHGAP10
PMAIP1
ZP4
ATOH1
IGFBP2
DUSP6
CCDC33
INSM1
LEFTY2
NHS
ADNP2
TPM1
S100A10
URM1
SOAT2
IGFBP6
DAPL1
CDCA7L
CDC73
RPN1
HOXB1
DLL4
PHOX2B
SP2
UNCX
ST18
DLX4
ZNF585B
ZNF383
PRUNE2
SYBU
CITED2
PRRX1
ID3
RARA
ECEL1
SP5
TPRA1
MCM2
MYLK4
RBPJ
ARID3B
NOTCH2
MAB21L2
NFE2
ASXL3
CDH18
NAV3
KDM2B
TLE3
ZNF746
CLGN
ME3
FAM222A
ID1
CNTN1
GATA4
RGS12
GPR108
FOXP1
MALRD1
CBFA2T2
MYRIP
PAH
ASCL1
MTRNR2L2
MSH3
DHFR
TRIM65
MRPL38
TRIP10
METTL24
GADD45G
HOXC4
CCNDBP1
GRSF1
IL23R
DMBX1
RIMKLB
IL17RD
KAZALD1
ARSG
KDM8
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
EXOC2
PPFIBP2
RUNX1T1
CR1L
SPATC1L
SNAPC1
NCOA7
PAX6
MSX2
MTRNR2L1
PRDM12
TRABD2B
MRPL34
DDA1
ABHD8
OTX1
TBX3
FRMD7
ZNF652
SH3BP2
BFSP1
RASSF2
IFI16
IER3
FLOT1
LPIN1
EVA1A
NDUFS7
SH2B1
INAFM2
NEK3
TCF7L2
FGR
PYDC5
PKDCC
METTL3
SH3BP1
ALDH1A2
PLEKHO2
TMPPE
MBD2
GLB1
CBX4
DHRS3
FKBP1A
DBX1
CACNA1D
AXDND1
RNF149
PDP2
TMEM14A
UPF3A
SCGB1A1
SULF1
ERLIN2
METTL11B
PSMB5
ABLIM3
TAF12
OR10AC1
LYL1
HIP1
PRDM6
MVB12A
RPS10-NUDT3
RPS10
KDM6B
KAT6B
VOPP1
HNRNPA2B1
CBX3
SPG7
HUS1
MTRNR2L8
CMTM7
HEXIM2
PHC2
PANK4
HES5
GTF3A
ETFBKMT
ARID5A
TESC
LIN28A
RPS24
POLR3A
NELFA
SRSF11
LRRC40
TMEM212
SEC14L1
NEO1
STK38
ZFHX3
KCNAB2
JAK3
HSPA1L
HSPA1A
NUTM2D
TBC1D10C
PPP1CA
CADM3
PARK7
MYBPC3
CCPG1
C15orf65
TDG
C12orf73
VIP
TIGD1
EIF4E2
HNRNPD
FRAT2
RPS6KA1
SMC6
NOXO1
GEN1
SASH3
NRROS
C11orf24
MRS2
PNKD
EMP3
SLCO4C1
RPLP1
ATG16L2
NR1D1
KMT2E
KIF21B
HOXD4
KDM3A
GRHL3
PRDM10
SLC7A5
UBXN10
PLA2G2C
TBC1D8
MBNL3
ERCC1
RASA4
PAX8
CCDC88A
SPECC1
RASL12
KBTBD13
LYPD1
BRWD1
ARHGEF10L
NADK
CATSPERG
IER3IP1
POR
CARNS1
LMO4
NCOA2
SALL2
FGFRL1
IRF2BP2
DGKZ
ENO1
WDR6
KLF17
HAND1
FOXB1
NBEAL2
CCDC12
BIN2
PSTPIP1
SNX1
CIAO2A
SKIV2L
NELFE
AMD1
SIRT4
NKD1
ING1
CARS2
ZSWIM6
EFHD2
FAM110A
CPSF4L
MEOX1
OTUD7B
ADM
TMEM104
NAT9
ATP23
TBL2
LPCAT3
MTMR4
MAGEA11
REV3L
CAND1
SHOX2
RSRC1
RASA4B
STIL
DIAPH1
NBPF1
CCDC114
NEK7
GGCT
CD79A
ZNF76
ZNF775
TRAF4
PLEC
CCDC102A
SLC39A7
RXRB
HSD17B8
CAMTA1
USP15
SNX3
LRRN4
WNT10B
RARG
AHNAK
MEF2D
ZNF740
CSAD
NEBL
NRXN2
HOXC8
VAV1
SH2D3A
KHDRBS1
SOX21
MXI1
LNPEP
CABIN1
PPP1R18
NRM
BHLHE40
RASSF5
CDC42EP3
TMEM242
DENND2D
CCDC174
ZNF367
DIAPH3
DDX3X
CNOT2
REC8
IMPG1
POLD2
IRX5
LIG3
CBFA2T3
GATA6
RPL17-C18orf32
RPL17
ZCCHC3
CCKAR
C20orf96
ASB6
MNT
NFKBIA
IQCH
DMD
CRABP2
AAGAB
TYRO3
TTC13
RXRA
ZNF414
LDLRAP1
ZFYVE28
CFAP99
ZDHHC1
CD38
INAVA
BCL3
CPVL
CHN2
BNC2
SKI
HEBP2
TRERF1
CMTR1
TPST2
HOXB5
TUBB
RAC2
MDC1
LRIG3
FTL
PCNA
IQGAP2
TUBA1C
LFNG
CDS2
POLR2J3
SPACA1
GPAA1
EXOSC4
RNASEH2B
LRIG1
MINDY2
SCAMP4
NDRG1
ADAT3
SMARCA2
MYO1G
NTRK2
CREB5
DIPK1B
SLC38A10
PKN2
OPA3
DCSTAMP
PKM
LOC102724265
CLDN2
AQP6
MYO1B
H6PD
PPIB
PTK2B
PDPN
DISP2
ARHGEF1
TNFRSF19
RAB11B
ADGRL2
NDFIP2
KBTBD11
COL23A1
MAPKAPK3
CISH
KCNIP4
RYBP
H2BU1
H2AW
GUCY1A1
COL11A2
ADGRG5
SHB
CDX1
ANKRD1
SMARCD2
SMAD3
GALNT10
FOXA2
AGTRAP
PLCB2
CDK5R1
SEPTIN4
BAX
USP3
NKIRAS1
GFI1
BST2
ERI3
MYO1F
PDE4D
ADCY7
RPL22
RNF207
PCTP
NAA80
IFRD2
HYAL3
PEX14
KCNH2
DFFA
YTHDF2
FAM120B
CEP41
HMGCS1
PRDM1
NAA10
ARHGAP4
CYP51A1
CLDN9
EVX1
PPCDC
ZNF397
LRCH4
FBXO24
ELANE
CFD
MRPS24
THRAP3
SLC35E2B
HESX1
PXYLP1
PPP1R1A
NOTUM
TBRG4
ADORA2A
HIBADH
CYP2E1
CCND3
RABGAP1L
NDUFV1
ARIH2
TXNRD1
TUBB3
NR1D2
MC1R
RNF139
SH3TC1
HNRNPF
TMEM9
STAT1
CYCS
TAF15
ZDHHC4
GSPT1
RNF166
CTU2
DGAT2
IGF2BP3
CNTN4
SYTL1
SYTL3
CRYBG1
SP7
BNIP2
DYNLL1
NECTIN1
B3GALT5
MECOM
MAGIX
BAIAP2
SOD2
PIK3AP1
KANSL3
FER1L5
SBF1
CDC42EP2
ARID2
SCNN1A
LTBR
DPP9
RNPEPL1
DUSP28
ANKMY1
MDFIC
CLIC4
PTP4A2
SEMA6D
NR2C1
LAT2
CPT1A
ABHD17A
KCTD6
ZBTB25
ZBTB1
AKIRIN1
IL6R
PRSS56
CHRND
KIF26A
DHX16
DTNB
TTI2
SP1
ATXN1L
SLC35E2A
CYTH4
AGO1
MYEOV
FOS
PTGES3
LRGUK
ZFX
RBL2
HNF1A
SRPRA
GAS7
FCHSD2
MBD6
DDIT3
TMEM222
SSX2IP
HHIP
VGLL4
PCDH11Y
SMUG1
FAF2
NXPH4
C12orf50
C12orf29
ZNF3
COPS6
WT1
CXXC4
SOCS3
SMIM3
ARMC12
UPP1
CASC3
CALM2
ZNF341
CD164
CTTN
SLC39A13
SLAMF8
ELMO1
LIX1
TYROBP
NFKBID
HCST
ANKRD13D
SLC25A6
TRMT6
SEBOX
MCM8
TBX2
RNF103-CHMP3
RMND5A
AHDC1
CSRNP1
SNAPC3
USP17L17
H2BC17
H2AC17
BAZ1B
KIF5C
KLHL7
RHBDF2
EFNB2
LAPTM5
PRRC2A
AIF1
USP42
DOT1L
SHC1
NR4A2
NOTCH2NLB
NOTCH2NLA
EIF1B
UNC13D
STX18
SLC3A2
CD151
SLC10A2
SBNO2
CLTC
PIP4P2
ARHGAP45
ASB1
MAP2K1
VANGL2