ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX014752 | NB-4
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◣ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

SPG7
IER3
FLOT1
SKI
ID1
PLCB2
NADK
NFE2
TBL2
INAVA
PRAM1
LAT2
LAPTM5
NCOA2
HMGCS1
PPCDC
ZNF414
SKIL
NAA10
ARHGAP4
UNC13D
WBP2
RNPEPL1
DUSP28
ANKMY1
GRAP
CD38
LFNG
MTRNR2L2
MSH3
DHFR
MYO1F
GRAPL
LCOR
NFILZ
C5AR2
RNF166
CTU2
STX1A
GFOD1
NIBAN3
CXXC5
CBX4
SERPINB1
MEF2D
CCL2
HSH2D
MYRF
MMP17
DHRS3
AHNAK
GRK6
TUBA1C
SPATA1
GNG5
RAD23A
CALR
FARSA
MTRNR2L8
PDCD6IP
MIDN
SREBF2
CRTC1
PCNA
CDS2
ARHGAP45
DLG1
RASGRP2
SQSTM1
COL4A2-AS2
DZIP3
CIP2A
TKT
MATN1
MBD6
DDIT3
PDE4B
CSF3R
MAP2K3
SH3BP2
SMUG1
ITGB2
FGR
INSIG1
ARID3B
COX20
MYO1G
RHBDF2
CSK
HIP1
IDH1
UPF3A
ARIH2
SIRPA
CTSD
NUDT4B
P2RY2
RPS6KA1
DBP
SPHK2
DOT1L
KIF21B
TPPP3
GFI1
CENPH
FMNL1
LRTM2
KRI1
CDKN2D
IRF1
ZC3H12A
CCDC88B
ZCCHC24
BMF
NFKBIA
ASB2
HNRNPF
FDFT1
NRL
PKLR
FDPS
DCAF11
ZNF775
RASSF4
MKLN1
DEPP1
TRERF1
S100P
OLIG1
NFIC
KAT6B
SSH3
MRAS
ZFYVE28
CFAP99
NLRP3
TOX2
LYL1
ARHGEF2
ADGRE2
ICAM1
CD79A
BAZ1B
MYBPC3
SULT2B1
PRKCD
PITPNM2
DENND4B
RNF157
RASSF2
MYEOV
SLC25A19
GPAA1
EXOSC4
LIMK1
BBC3
C16orf54
RBM15
TGM3
ADD1
BCL3
SYTL1
RAB11FIP3
C11orf91
KAZALD1
DRAP1
C11orf68
ARHGEF18
CD300A
PSMD3
DNAJB1
EMP3
CCDC114
PKN1
POC1B-GALNT4
GALNT4
TCAP
PNMT
MSMO1
KRAS
TMC8
TMC6
KEAP1
LRPAP1
ZNF740
CSAD
SNX15
CCND3
CD248
SHISAL2A
FADS3
SEC14L1
ATG16L2
S1PR2
CTBP2
INAFM2
RARG
LYST
TMEM104
NAT9
RUNX1
CCDC57
ATP23
HCRT
GHDC
CEBPE
CYBA
AZU1
PRTN3
RAB11FIP1
BHLHE40
SH2B3
EMILIN2
MRPS31
TMEM205
RAB3D
CCDC159
NRG4
NUP210L
ARID2
METTL26
WDR90
SREBF1
PPP2R2D
BIN2
NINJ2
SMARCD2
CCDC102A
ADGRG5
RNASEH2B
EPM2A
CEBPA
TBL1XR1
HUS1
SPDYE9
SPDYE8
SPDYE15
SPDYE13
SPDYE11
NDUFA4
PIK3AP1
PACC1
VSIR
RHOC
AGTRAP
SMIM20
LRMDA
C15orf39
TRIB1
HES1
GALNT9
PDE6B
ZSWIM1
SPATA25
NEURL2
CTSA
CDCA7L
HMGCR
PDE12
RAC2
ITGA5
CLEC3B
EVL
MTRNR2L1
LRP3
LGALS1
NOL12
NPEPL1
H4C12
H4C11
H2BC14
H2AC14
PGAM5
DUSP10
C10orf105
TCTEX1D4
PLK3
BTBD19
RPS6KB2
PTPRCAP
CORO1B
GRK2
ARL5C
SLC35D1
PKM
NOL4L
SLC22A18
E2F3
SLC47A1
NCR3
LTB
LST1
SETD1B
MNT
KCNH2
YARS1
S100PBP
GSE1
FERMT3
ACTL9
NR2C1
P2RX5
RHOF
LHX3
PELATON
IMPDH1
UBE2E1
MTRF1L
ELANE
CFD
ARHGAP35
AP2S1
TM4SF19
FCGRT
VENTX
ALOX5AP
KIAA0513
C5AR1
H6PD
AP5B1
CITED4
KRT8
GYPC
CYP51A1
ARRB1
PLAU
FASN
SH2B1
ANKRD13D
RAP1GAP2
SPRED2
MAMSTR
CCDC174
ASB1
ZNF595
EVA1B
KCNE3
SH3BP1
SEPTIN9
TNFRSF4
TNFRSF18
IGSF10
MGAT4B
TRIM8
CHST13
MID1IP1
SCUBE1
MAP1S
ZNRD2
FAM89B
EHBP1L1
PLIN2
MYBPH
LMTK3
SLC38A10
OAZ1
HSP90AB1
LMLN2
EIF1B
SQLE
HIVEP1
JUP
TANK
SLC9A3R1
RAB37
TRIB3
ANP32E
CASTOR1
DUS1L
GMEB2
ADGRG3
SOAT2
IGFBP6
GPCPD1
NCF1
SPDYE12P
B4GALT1
ZNF746
RBBP5
USP3
UPP1
GBE1
SMCHD1
TYROBP
NFKBID
HCST
MXI1
PARP9
DTX3L
PARP15
UROD
HECTD3
RAPGEF1
MLXIPL
STN1
WDR43
ARL4A
CD1D
IFNGR1
FAM131B
ZYX
AEBP1
PKN2
IGF2BP3
STRA6
ATF3
ZASP
SAP25
PIKFYVE
ANKRD10
NUFIP2
PDP2
GPR132
PPP1R27
MCRIP1
EXTL1
ADPRHL1
TPRA1
MCM2
PEAK3
H4C15
H4C14
H3C15
H3C14
MAP3K8
PIWIL4
RNF103-CHMP3
RMND5A
PWWP2B
IL1RL1
TAGLN2
RCAN1
TBC1D10C
PPP1CA
ATP6V0D1
AGRP
MSRB1
SMG6
UMODL1
LPO
CTTN
SLC1A5
C12orf75
SLC12A6
NUTM1
NOP10
ZDHHC19
SLC51A
ETFBKMT
SLC16A3
SCAMP4
ADAT3
ABHD17A
GRIFIN
DENND2D
PIK3CD
SIPA1
TNFRSF10B
NFIL3
LY6E
TLR9
CPSF4L
NUP210
SIGIRR
RHBDF1
MPG
CTDSP1
PLEK
GTF3A
CA11
TBXA2R
PPP2R5B
ATG2A
RAVER1
ICAM3
GPR146
SELPLG
GPR160
MINDY2
KLF16
NR4A1
TAMALIN
RARB
DUX4
PLEKHO2
ADAP1
CDK13
SH2B2
PDE8A
ADRM1
SEC11A
F11R
ZC3H4
C3orf86
PPIAL4F
PPIAL4E
PPIAL4D
TRAPPC5
MCEMP1
TCF3
S1PR4
NCLN
FXYD2
DSCAML1
NKIRAS1
NR1D2
SNX33
H4C9
H2BC11
H2AC11
H2BC12
H2AC12
GMIP
MTRNR2L9
OPA1
TOP1MT
GLIPR1L1
CAPS2
PDCD4
CYB561D1
ATXN7L2
BAZ2A
BCAP31
ABCD1
LRPPRC
STX10
IER2
LDLR
RCOR2
KIF5C
DENND6A
S100A2
UBALD2
DCTN4
DDAH2
CLIC1
MSH5
PCYT1A
SCD
ZNF217
TMEM101
IQGAP2
ARID3A
KISS1R
AXDND1
FBXO41
EGR4
ACACA
CTCF
FOXK1
TRPV4
EFHD2
DGAT2
LOC388282
KIFC3
ATP2A3
KCNAB2
KLF9
CD82
TSPAN32
C11orf21
PPARG
OSM
PCNX3
MAP3K11
WNT1
WNT10B
TXNRD1
FLNA
TRPM2
IFT52
TREM1
RBKS
BABAM2
GPATCH8
MVK
KBTBD2
UBC
SPDYE5
POM121C
DIO1
SLC17A9
P2RX1
MUC5AC
MYADM
SH2D3C
CDK9
KLHL24
KCNIP1
LY6K
CCDC154
PPP1R18
NRM
DHX16
FOS
IFITM3
RGPD2
RGPD1
STEAP3
SLC12A7
PHF19
CIRBP
CLTC
ZDHHC17
HRH1
NCOA4
SPDYE17
CFAP100
CBFA2T3
PDLIM7
NAMPT
AVPR2
ZBTB7A
SCGB1C2
SYNGR4
MTHFR
CLCN6
NDRG2
ARHGEF40
CCDC9
ANPEP
GNG4
VASP
PARL
ATP13A2
PRNP
IRF5
LZTS2
ASIC3
IRF2BP1
LONRF3
FGGY
PLEKHO1
SPDYE16
MICAL1
CHPT1
CCL20
CRYBG1
FAM180B
TMEM91
EIF4A3
PLEKHA8
BCL2A1
C1QTNF4
MPO
BPI
KLHL36
TRIM11
VPS72
PIP5K1A
TRIM17
VOPP1
VPS9D1
ICAM5
ICAM4
RHOQ
ATP6V1E2
OGFOD2
ARL6IP4
ABCB9
DUSP7
FCN1
SP1
CALHM3
SSBP4
TAC4
ISYNA1
MTF2
TBC1D14
PTPN6
C12orf57
EPN1
UBE2J1
PMPCB
PTCD1
CPSF4
ATR
TOR4A
ZGPAT
ARFRP1
RAB27A
TAF1A
ANK1
B3GNTL1
LINGO1
HBP1
H4C13
H3C11
H2AC16
H1-5
QPRT
TEX2
COPS7A
B9D1
MFAP4
MAPK7
B3GNT5
TYK2
QRICH1
MRI1
C19orf53
OAF
GALNT7
HSPH1
LPCAT3
STK35
ZNF584
ZFP36
PLEKHG2
FRA10AC1
NOG
RHOH
ADM
CCDC9B
RHEBL1
KMT2D
STK3
PPRC1
TFAP2A
FSCN1
CRISPLD2
CAMP
VIPR2
BORCS7
OSR2
AMY2A
LIMD2
ZSWIM9
LIG1
PIP4P2
CPQ
ENG
NUDT15
SLC9A5
FHOD1
UBE2H
H3C4
H4C4
PLEKHA2
H2BC6
GOLIM4
CPXM1
RDH12
RDH11
MRPS15
TNFRSF1B
TIMP2
ITPRIP
LYN
DOCK2
MYO18A
RASIP1
IZUMO1
FUT1
CPNE5
PTEN
KLLN
LZTFL1
ATXN1
SRF
SPN
NFAM1
MAPK12
NTSR1
LRRK2
ADGRG1
KANSL3
FER1L5
BANP
IL32
ITPRIPL2
ZNF846
GPR108
DGKZ
PSAP
C3
NOTCH3
RNF149
ARMC12
FKBP5
EP400
TNFRSF10A
EPB41L1
GTF2IRD1
ZNF76
CCDC59
HAND2
CDKN1A
FRAT1
RIOK3
MYC
EPS15
TTYH3
FCGR3A
SNUPN
SKIDA1
LMNA
MLLT10
CACNA2D4
POLR2E
GPX4
HDAC7
MIDEAS
RELT
SIRT7
MAFG
TCIRG1
NDUFS8
FBXO6
FBXO44
FBXO2
FCRLB
ERCC1
NR4A3
HSP90AA1
TNFSF14
UCN2
PFKFB4
MARCHF2
SULT6B1
CEBPZOS
CUL2
LSG1
HOXA3
HOXA4
HOXA5
ZDHHC4
PTP4A2
DYRK1A
DHX37
BRI3BP
TMEM88
NAA38
CYB5D1
DUSP6
NAA80
IFRD2
HYAL3
KCNE1
DRC7
FTL
BAX
DMAP1
KLF10
MIEF1
PLXNB2
CSPG4
NDUFS7
ING1
CARS2
SC5D
MAP1LC3B2
SPRING1
RNFT2
NIT2
ALDH2
TMIGD3
ADORA3
TXNDC5
UNC13A
NFIA
RXRA
INKA2
UCP2
CDCA4
VDR
GRAMD1C
LTA4H
HAPLN4
NUBP1
GCHFR
APBB1IP
FAM214B
UHRF2
UBR4
FBRSL1
GDPGP1
CIB1
SRP14
C15orf62
PIM3
XCR1
GABRR2
INTS1
ATXN2
DHX33
PEX5
SBF1
ANXA4
AFF1
ATP11A
EVPLL
YWHAQ
UNC45A
HDDC3
INPPL1
FOLR2
ITGAL
CNOT2
CLIC4
SH3BGRL3
H2BC15
H2AC15
NYX
CDC42EP4
CHD9
SIGLEC11
ZNF317
RBPJ
MFN2
TM7SF3
MED21
PPIF
HSD17B7
RWDD1
KMT5A
POLG
TSPOAP1
AHCYL2
TP53I11
TMBIM6
SREK1IP1
CWC27
DNAJB2
MLEC
DAZAP1
TPD52L2
ABHD16B
ZNRF2
FCGR1A
PRSS57
BCAT1
PPIAL4C
CCL5
PNKD
CCNL1
PSMF1
NOTCH1
STING1
SIGLEC7
SASH3
BCKDK
PGLS
TRIM46
KRTCAP2
DAGLB
SLC39A11
TNFAIP2
RAB43
ZNF254
LIPM
ENO1
SMAD3
ARHGAP27
TBP
PSMB1
COMMD4
SETDB1
NRROS
SCAP
NKG7
ETFB
CLDND2
FZD5
DNAJB12
MAPK8
CCL3L3
CCL3L1
CCL3
TRIM14
ADAM8
AQP9
FGD3
PARP2
HDGF
KDM3B
CCNB1IP1
B2M
CYTH3
SLC25A15
MRPL24
VGLL4
MRPS23
HMGN4
UHRF1
ARRDC5
PHETA1
MTRNR2L10
ZNF750
FOXP1
CHSY1
HPCAL1
ANKRD33B
P2RY11
EIF3G
OGA
FFAR2
DYNC1I2
VAV1
SH2D3A