ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◣ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
ZNF335
ZP4
RABL2B
MAPKAPK5
PSMD1
RABL2A
NME6
HES1
IPO13
VEZT
FGD6
NEUROG3
RWDD1
CACTIN
HES3
VDAC2
TAOK3
SUDS3
NUP85
ZNF503
POLR3F
DZANK1
HSPA9
IGFBP2
DYNC1LI2
RPL21
NVL
ATP5MG
FAM187A
EFTUD2
CCDC103
VTI1B
PAK1IP1
C6orf52
ARHGAP10
TBCK
AIMP1
DCTN1
FRG2C
BLCAP
NUP205
POLR2E
ACTR10
SRD5A1
NSUN2
REXO1
CDX2
DPH6
SKP1
PMAIP1
C19orf48
NCLN
EXOSC5
BCKDHA
STAM2
PSMG2
CEP76
UPF2
MRPS7
GGA3
SLC35B1
STAM
PES1
TSN
PNO1
DUX4
GOSR2
HADHB
HADHA
SUPV3L1
INSM1
LYRM4
FARS2
FARSB
SEC61B
ANAPC7
RBBP5
CAPRIN1
SKIL
ZNF576
IRGQ
IQCG
RPL35A
ZDHHC1
RBKS
BABAM2
LZTS1
PSMD12
TSNAX
TMED1
PCBP1
MRPS5
SART3
ISCU
ATOH1
GOLGA5
NDUFA4
VARS1
SF3B3
COG4
EIF4ENIF1
ICE1
TTC8
PAF1
MED29
MRPL11
COX7A2L
RPS12
PI4KB
SMC2
PDAP1
BUD31
BNIP3
RPS23
ATP6AP1L
OSGEP
APEX1
MALRD1
GADD45G
RBBP7
USP1
PANK4
HES5
HOXA4
ZRANB2
TM9SF1
LEFTY2
NEUROG1
KDM8
FAM104A
C17orf80
TTYH1
SELENOF
HS2ST1
NBAS
CCDC33
TESC
RPS27A
CLHC1
NFKBIL1
DDX39B
ATP6V1G2
UFM1
XPNPEP3
ST13
PAX6
PRRX1
ADK
AP3M1
UBE2I
ST18
FZD8
RPS29
LRR1
DLL4
CPSF4L
PHOX2B
RABGGTB
PDHB
PROSER1
NHLRC3
CR1L
HOXB1
PTGES2
NEUROD1
HOXB3
HOXB4
BICRA
PNKD
HHIP
APOM
BAG6
RASL10B
HNRNPA2B1
CBX3
PIN4
SULF1
NOXO1
GFER
TAF9
RAD17
AK6
FRG2
TRABD2B
CNTN1
NEDD9
ERRFI1
GTF3A
NUTM2D
PDPN
RYBP
PDE6B
MRTO4
EMC1
STRA6
DDX3X
SLC10A2
SOX12
HOXD3
SEC11C
EPHA5
MYRIP
DLX4
STK36
RNF25
RGS12
TMEM120B
NEK3
KAZALD1
CSRNP1
ARHGAP11A-SCG5
ARHGAP11A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BFSP1
LIMCH1
PRUNE2
COMMD1
CCT4
CCDC200
OR6B2
NDUFA10
METTL11B
ZFX
KDM2B
LRATD2
GADD45GIP1
PDHX
APIP
CNTN4
HES7
TPRA1
TTLL6
RPN1
LPIN1
FJX1
GFRA3
CACNA1D
RPH3A
TLE4
OTX1
HNF1A
EIF2S3
TIGD1
EIF4E2
SPACA1
TMEM107
RAI14
KIF26A
ABCB5
ZGPAT
ARFRP1
CNPY2
PCBD2
SYBU
OAZ3
BRWD1
WDR59
UPF3A
LRIG1
CLGN
PDGFA
RPL7
RDH10
REV3L
SUCLG1
HOXA3
SOCS3
CLDN2
CDC73
ANKLE2
LBX1
SOX11
HNRNPD
DCTN3
ARID3C
RARA
DMBX1
TCF7L2
AXDND1
ZMAT4
TNC
GTF3C4
DDX31
REC8
WBP1L
DHRS3
TBC1D8
ADAM18
SALL1
ZNF383
CCN1
CAMTA1
ECM1
LIN28B
BAHCC1
PDE12
HOXA2
DSCAML1
CDX1
DBX1
HOXB8
HOXB7
FGFR4
CATSPERG
MSX2
BAIAP2
XIAP
GORAB
C15orf61
CPN2
ANK2
MAST2
KIF21B
GPR176
VOPP1
CD99L2
SIK1B
SIK1
USP17L20
USP17L22
TSHZ1
SLC39A6
ELP2
ZADH2
PPM1B
TMEM131L
PRDM12
RBPJ
WDR74
STOML2
TMPPE
GLB1
ADAMTS15
PACSIN2
CYP26A1
RADIL
PIPOX
QPRT
ALDH1A2
LIG3
BAZ2B
TPM1
GAD2
ABLIM3
KDM6B
KLF17
ZSWIM6
EBF3
CPLX1
HMGN1
ID2
METTL24
CDC42EP2
ZNF746
SOX21
FAM107A
LRRC15
MYLK4
SLC22A2
OR8J1
LZTFL1
DHX32
ONECUT2
TBX3
CEMP1
ERCC1
HOXA5
DST
PKNOX2
CPVL
CHN2
LINGO1
ALKBH6
SYNE4
TLE2
RPS10-NUDT3
RPS10
RPS24
POLR3A
EIF4H
ALKBH5
SLC7A5
SOX6
FABP5
FGF19
MTCH2
RNF138
FBLN1
JAKMIP1
LHX2
MSX1
ZFHX4
ABHD11
ADGRL2
SMC6
GEN1
ZCWPW1
MEPCE
TRAP1
SALL4
ANTKMT
METRN
EIF2S1
ATP6V1D
TLE6
KLF6
RUNX1T1
TLE1
ID3
NEBL
PHC2
YAP1
SPOCK2
KMT2A
TBL1XR1
HOXA6
ITPRIP
CYP51A1
SPCS1
GLT8D1
H3-3A
ZNF775
KMT2B
NUP210
C12orf73
DAAM1
TPST2
MEX3B
GREB1
RPRM
KRT20
PAX3
KLHL15
CNKSR3
MUSTN1
ITIH4
PIGR
MEIS3
STMN1
NR6A1
TLE3
SEMA6D
HEY1
SRGAP3
BBS9
HOXC4
SNCG
MMRN2
KEAP1
EIF4E3
DAPL1
HOXD1
STK38
TFDP2
PAX4
CA4
HOXC5
LRRC10B
CUEDC1
SERPING1
TPCN1
FGF2
PCDH11Y
TMEM70
ELOC
ALOX5AP
TUBB3
TANC1
USP17L11
USP17L18
USP17L21
USP17L12
ADM
HOXB9
CER1
CS
MEF2C
TAGLN3
MEIS2
IFI16
FBXO10
TCF4
CEP97
TCF20
TMEM14A
PLAGL1
MEOX1
IL37
RARB
LIN28A
NKIRAS1
NR1D2
ASXL3
ENO1
MSI2
ZFHX3
HOXA9
HOXA7
MARCHF7
LAPTM4A
SP5
NUTM2G
PCBP4
SRSF11
LRRC40
BNIP2
USH1C
ME2
TYRO3
PANK2
PCDH18
RGS16
LDLRAD3
PBX3
SEMA4B
C1orf141
IP6K3
ERI1
ELMO1
LYPD6B
PLEKHA6
CSTF2T
FOXD1
CDK14
BTF3
N4BP3
HRK
M1AP
DUSP6
ABAT
NELFA
GPR157
REV1
IGFBP6
CDCA7L
C16orf91
SEC22B
FOXP2
NFE2
DNAJB7
SOAT2
ARID3B
GATA4
MRPL38
SMPDL3A
TRIP10
GPR108
MTRNR2L2
MSH3
DHFR
POP5
GRSF1
NR2F1
ARSG
MTRNR2L1
FOXP1
RASSF2
MRPL34
ABHD8
EVA1A
SH2B1
IER3
FLOT1
NDUFS7
FGR
PKDCC
PLEKHO2
INAFM2
MBD2
CBX4
SPATC1L
RNF149
SH3BP2
HOXA1
LYL1
ZNF608
HUS1
HEXIM2
ETFBKMT
HSPA1B
ARID5A
CITED2
ABCG2
NEO1
KCNAB2
JAK3
ARHGAP24
MRS2
PARK7
CCPG1
C15orf65
ID1
RPS6KA1
DDA1
SEC14L1
FRAT2
C11orf24
SASH3
PDZRN3
KAT6B
ATG16L2
HOXC6
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UBXN10
NCOR2
GRHL3
LYPD1
KDM3A
PRDM10
PAX8
SLCO4C1
CCDC88A
SNX1
CIAO2A
SPECC1
ARHGEF10L
NADK
DGKZ
FGFRL1
BIN2
WDR6
NBEAL2
NKD1
SKIV2L
NELFE
EFHD2
FAM110A
NCOA2
TMEM104
NAT9
MTMR4
DIAPH1
ZNF76
EMP3
CCDC114
NBPF1
USP15
PLEC
WNT10B
SNX3
POR
LRRN4
TRAF4
MEF2D
KMT2E
CABIN1
MXI1
RASSF5
LPCAT3
MTRNR2L8
LNPEP
RARG
IMPG1
SPG7
DENND2D
PPP1R18
CDC42EP3
ZNF367
SHOX2
RSRC1
CCDC174
DIAPH3
IQCH
AAGAB
NFKBIA
HEBP2
CBFA2T3
ZCCHC3
MAMDC2
CD38
VAV1
ZNF414
INAVA
BCL3
TRERF1
RAC2
LRIG3
ATP23
ZNF718
ZNF595
CMTR1
PCNA
POLR2J3
TUBB
SYNPO
IQGAP2
NTRK2
ING1
RNASEH2B
GPAA1
EXOSC4
PPIB
MINDY2
H6PD
CNOT2
SLC9A1
SIRT4
OTUD7B
FTL
RXRA
GALNT10
PKN2
NDFIP2
MAPKAPK3
PLCB2
SMAD3
USP3
ADCY7
TRIM48
SHB
TXNRD1
MUC12
PEX14
DFFA
MOBP
FAM120B
ARHGAP4
YTHDF2
SMARCD2
PKM
IFRD2
PCTP
PRDM1
HESX1
CFD
MRPS24
SLC35E2B
TBRG4
ADORA2A
COL23A1
RNF166
CYCS
RNF139
RAB11B
IGF2BP3
ANKRD1
SH3TC1
DYNLL1
SP7
ZDHHC4
CEP41
HMGCS1
ARIH2
MECOM
CBWD5
CBWD3
LTBR
ANKMY1
DPP9
SBF1
PIK3AP1
CLIC4
ARID2
ERI3
ZNF740
CSAD
SOD2
KCTD6
CPT1A
DTX4
IL6R
PRSS56
AKIRIN1
SLC35E2A
KANSL3
FER1L5
CYTH4
HOXB5
MYEOV
PDE4D
LRGUK
PTGES3
HAND1
FOS
AGO1
NR2C1
MBD6
DDIT3
TMEM222
NOTCH2
FAF2
C12orf29
RND3
SRPRA
RBL2
NXPH4
FCHSD2
SSX2IP
DMRT3
CTTN
PXYLP1
ZNF341
AHDC1
ATXN1L
UPP1
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
BAZ1B
SLAMF8
CALM2
ANKRD13D
DTNB
RNF103-CHMP3
RMND5A
TYROBP
UNC13D
SEMA4D
TSPAN16
TTI2
PRRC2A
AIF1
PIP4P2
LAPTM5
MAP2K1
MYADM
CENPH
ZNRD2
GATD3B
GATD3A
FAM89B
EHBP1L1
CLTC
SEH1L
RFESD
ZNF25
VANGL2
USP42
ARHGAP45
RXRB
MTCH1
MAD1L1
SYNJ2
KCNH2
IL21R
CXXC4
ZNF3
STX18
PHF19
PPCDC
DGAT2
THRAP3
RNF125
SLC43A3
ERLIN2
RASGRP2
ARHGEF1
PEAK3
MRPS31
H2BC5
H1-4
COX5A
RAD50
MIDN
NAGLU
MAP1S
EPM2A
PDE1B
PKNOX1
ATP8B4
HSD17B8
ZBTB17
PSMD3
PIKFYVE
SPATA25
CTSA
HECTD3
BHLHE40
KRI1
CDKN2D
NR1D1
ARL4A
SBNO2
MYO10
SDE2
KAT6A
FBXO41
RWDD2A
PGM3
MAPRE2
ARHGEF38
SMPD1
ZBTB25
ZBTB1
MAPKBP1
WT1
BCAT2
TNFRSF19
FMNL1
PRKCD
GATA3
WTAP
CCDC88B
STRADA
NUBP1
TMEM123
CBWD6
MTF2
CASC3
TCHP
SLC39A7
IFNGR1
ASNS
GRK6
MAGEF1
MYCBP2
ZNF318
CPNE5
RCOR1
PEX3
ADAT2
PRKDC
MTRF1L
MCM4
LSM5
AVL9
NIBAN3
USPL1
HMGB1
NTAQ1
MC1R
FXYD2
USP17L15
UBL7
C1orf159
ATAD3B
SCMH1
H3C12
H2BC17
H2AC17
GPX4
OR2L13
OR2AJ1
SACM1L
DYNLT1
NGRN
SH3BGRL3
RGL1
MCU
BUD13
BNC2
TIGD5
EEF1D
DPEP1
SCAMP2
VPS37C
RUNX1
RNPEPL1
RER1
MORN1
CAPG
GRIP1
CISH
NIBAN2
DLG2
EOLA2
ZNF436
ARF3
GPSM3
GPATCH8
RPL17-C18orf32
RPL17
C18orf32
TAF12
NCBP2AS2
NCBP2
LGALS1
OST4
LIX1
ARHGAP27
YBX2
USP21
CYB5R4
ARHGEF18
GABRB2
MRGBP
DONSON
DNAJB8
ATAD3A
CNOT6
KLHL25
KIF1C
INCA1
METTL25
FAM227B
DTWD1
DDX23