ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◣ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
TAOK3
SUDS3
DYNC1LI2
FAM187A
EFTUD2
CCDC103
FRG2C
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
NSUN2
RPL21
REXO1
BLCAP
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
DUX4
MRPS7
GGA3
STAM
C19orf48
PES1
STAM2
NCLN
UPF2
ATP5MG
DCTN1
SKP1
ANAPC7
TSNAX
FARSB
ZNF576
IRGQ
TSN
SART3
ISCU
PNO1
COX7A2L
TTC8
ZRANB2
SEC61B
RABGGTB
PDAP1
BUD31
XPNPEP3
ST13
CAPRIN1
ZNF503
SMC2
PCBP1
TMED1
SF3B3
COG4
MRPL11
RBBP5
VARS1
SEC22B
HOXA4
PI4KB
SMPDL3A
ACTR10
NDUFA4
IQCG
RPL35A
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
GOLGA5
SELENOF
HS2ST1
FZD8
EIF4ENIF1
SLC35B1
DPH6
LBX1
PSMD12
UFM1
OSGEP
APEX1
MRPS5
PAK1IP1
C6orf52
ADK
AP3M1
FGF19
RPS12
ANK2
NFKBIL1
DDX39B
ATP6V1G2
RBKS
BABAM2
SUPV3L1
USP1
APOM
BAG6
ARHGAP24
FAM104A
C17orf80
NEUROG2
HES3
ABCG2
ICE1
ARHGAP11A-SCG5
ARHGAP11A
TLE1
FOXP2
RPS29
LRR1
TM9SF1
TMEM120B
MYLK4
DBX1
SUCLG1
TLE4
EVA1A
LRATD2
NCOR2
FRG2
PTGES2
PCDH11Y
COMMD1
CCT4
PDE1B
TMEM14A
C16orf91
DCTN3
ARID3C
PIN4
OR6B2
NDUFA10
PAF1
MED29
SYNPO
RPL7
RDH10
TRIM71
ATOH1
PDZRN3
PDHB
ADAM18
BNIP3
PRUNE2
MSX1
KITLG
METTL11B
PRDM13
TPM1
WT1
HES1
CCDC200
PIM1
RGS12
VEZT
FGD6
FOXD3
RND3
LRIG3
TRABD2B
CCN1
PRDM12
TMEM107
KCNK16
PDHX
APIP
LRAT
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MRTO4
EMC1
USP17L20
USP17L22
SPTBN1
MEIS2
CD69
TPO
SH3BP5
STK36
RNF25
NEUROD1
DAPL1
ZFHX4
ID2
DTX4
TAF9
RAD17
AK6
IGFBP2
AGPAT3
CEP41
CDX2
OAZ3
ERRFI1
ZCCHC13
GALNT14
EIF2S3
HOXB3
HOXB4
SOX21
AGMO
C10orf90
FHL1
RBP3
PDE6B
HOXA3
SPACA1
SEMA4D
OTUD6A
NRARP
ZNF608
GPR176
PMAIP1
CTXN3
ID1
B3GALT2
NEBL
TRMT9B
RAI14
NEUROG3
GORAB
ATOH8
SEC11C
CACNA1D
DHRS3
CCDC88C
RSPH9
LIMK2
KIF21B
VAV3
PRRX1
CETN1
MXI1
TEX2
KCNK10
DMRT3
HPS1
HOXD3
NTM
TPRA1
IL17B
GUCY2C
PDE12
HOXA2
CNPY2
BAIAP2
SLC7A5
JAKMIP1
TLE3
PPP1R12B
CCDC198
ZGPAT
ARFRP1
TLE2
SKIL
HMX2
LMO1
SPIRE1
RARA
POP5
ACVR1
C1orf105
NXPH4
KLB
LRGUK
MTMR7
ELAPOR2
BFSP1
UBE2I
NEUROG1
OSER1
PGPEP1L
CEBPD
HOXC5
SLA
CDC73
OR5A2
CHD7
GTF3A
NUTM2D
DDX3X
PAM
NPAS1
TSPAN13
GSX2
REV3L
BICRA
SNRPN
MXRA7
FLVCR2
LRIG1
FGD3
GADD45GIP1
USP17L11
USP17L21
USP17L12
POU2F2
PCBD2
ERCC1
MNX1
ZNF746
PHC2
DLG2
PPFIBP2
PRRC2C
NEO1
TPST2
CLEC18C
FGFR2
CDH16
CRABP2
DMBX1
FOXP1
RGL1
MUSTN1
ITIH4
SSBP2
TMEM237
ST18
HOXC4
DMD
TTR
TRPM3
PHOX2B
MRPL38
RUNX1T1
ZFX
PPP1R3D
FAM217B
PLCH1
HDAC9
ST8SIA3
TBX3
USP17L18
USP17L19
CYP26A1
ZNF383
ID3
DSCAML1
GNG12
ZNF367
PREX2
METTL24
CLDN2
ELMOD2
TNFRSF19
RPN1
FMN2
GTF3C4
DDX31
USP17L15
SYBU
CAMTA1
MEF2C
RAN
FSTL1
ALKBH5
DONSON
MEIS3
SLC2A9
LHX2
SPCS1
GLT8D1
CNN3
TMPPE
GLB1
SLC39A14
RCOR3
HNF1A
CS
CHD8
MAB21L2
HPD
LMO2
FAM181A
KLHDC7A
GPSM3
PBX2
HNRNPA2B1
CBX3
CHMP4C
CLRN1
NR2F1
IPO11
RCOR1
NXT1
ZNF853
ARHGAP10
B3GALT5
QPRT
DLL4
PDPN
LIX1
MS4A4A
CASC3
TSPAN11
RARB
PCDH18
LIN28A
REC8
VSTM2L
VANGL2
LGALS12
KRTAP12-1
NEK3
LRRC10B
CCDC33
KMT2A
IGFN1
NRCAM
CLEC18B
CATSPERG
FAM162A
CCDC58
CPLX1
AXDND1
VOPP1
CDRT15L2
KIF26A
RBM39
CNTN1
MMRN1
ABAT
SH2B1
HRG
ARHGEF28
OAZ2
PHTF1
DDO
LMO3
SRSF11
LRRC40
FGF10
TRDMT1
GSTP1
TSPYL1
DSE
FGFR4
RASSF10
PRSS47
PAX8
DUSP2
KAT6B
GCSAM
MAD2L2
DRAXIN
SPOCK2
NBAS
CDH18
MECOM
WBP1L
GAS2L3
OMD
TXNRD1
BAHCC1
ADM
SOX6
IGFBP6
SOAT2
SH3BP4
DUSP4
PEX2
ANKRD6
ID4
SIRT4
FAM107A
FRS2
PROS1
JUN
TP53INP1
ZP4
WDR74
INSM1
BBS9
LEFTY2
CDCA7L
ANKLE2
DLX4
LZTS1
DUSP6
SP5
RBPJ
NFE2
DNAJB7
KDM2B
CLGN
ARID3B
GATA4
TMEM70
ELOC
MALRD1
MYRIP
RBBP7
GADD45G
TRIP10
GPR108
MTRNR2L2
MSH3
DHFR
GRSF1
ARSG
KDM8
KAZALD1
MTRNR2L1
CR1L
RASSF2
PAX6
MSX2
MRPL34
ABHD8
LPIN1
IER3
FLOT1
NDUFS7
FGR
PKDCC
IFI16
TCF7L2
PLEKHO2
HOXB1
INAFM2
MBD2
CBX4
SPATC1L
RNF149
SH3BP2
UPF3A
SULF1
HOXA1
ABLIM3
LYL1
HUS1
HEXIM2
KDM6B
ETFBKMT
PANK4
HES5
TESC
RPS10-NUDT3
RPS10
NELFA
HSPA1B
ARID5A
CITED2
ZFHX3
KCNAB2
JAK3
STK38
MRS2
PARK7
TIGD1
EIF4E2
CCPG1
C15orf65
RPS6KA1
DDA1
SEC14L1
SMC6
GEN1
FRAT2
C11orf24
SASH3
C12orf73
HNRNPD
ATG16L2
HOXC6
RPS24
POLR3A
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UBXN10
GRHL3
LYPD1
KDM3A
PRDM10
SLCO4C1
CCDC88A
SNX1
CIAO2A
TBC1D8
SPECC1
ARHGEF10L
NADK
BRWD1
DGKZ
SNCG
MMRN2
KLF17
PLAGL1
FGFRL1
BIN2
ENO1
OTX1
WDR6
NBEAL2
NKD1
SKIV2L
NELFE
EFHD2
FAM110A
NCOA2
TMEM104
NAT9
MTMR4
DIAPH1
ZNF76
EMP3
CCDC114
NBPF1
USP15
PLEC
WNT10B
SNX3
POR
LRRN4
TRAF4
ZSWIM6
MEF2D
KMT2E
CABIN1
RASSF5
LPCAT3
MTRNR2L8
LNPEP
RARG
IMPG1
SPG7
CPSF4L
LIG3
DENND2D
PPP1R18
CDC42EP3
SHOX2
RSRC1
CCDC174
DIAPH3
IQCH
AAGAB
NFKBIA
HEBP2
CBFA2T3
ZCCHC3
MAMDC2
ZDHHC1
CD38
VAV1
ZNF414
INAVA
BCL3
TRERF1
RAC2
ATP23
ZNF718
ZNF595
CMTR1
PNKD
PCNA
POLR2J3
TUBB
IQGAP2
MEOX1
TYRO3
NTRK2
ING1
RNASEH2B
GPAA1
EXOSC4
PPIB
MINDY2
H6PD
CNOT2
SLC9A1
OTUD7B
FTL
RXRA
GALNT10
PKN2
NDFIP2
MAPKAPK3
PLCB2
SMAD3
RYBP
USP3
CDX1
ADCY7
TRIM48
SHB
NKIRAS1
MUC12
PEX14
DFFA
MOBP
FAM120B
ARHGAP4
CYP51A1
YTHDF2
SMARCD2
PKM
IFRD2
PCTP
PRDM1
HESX1
CFD
TLE6
MRPS24
SLC35E2B
TBRG4
NR1D2
ADORA2A
COL23A1
RNF166
CYCS
RNF139
RAB11B
IGF2BP3
ANKRD1
SH3TC1
DYNLL1
SP7
CNTN4
ZDHHC4
HMGCS1
ARIH2
CBWD5
CBWD3
LTBR
TUBB3
ANKMY1
DPP9
SBF1
PIK3AP1
CLIC4
BNIP2
ARID2
ERI3
ZNF740
CSAD
SOD2
KCTD6
SEMA6D
CPT1A
IL6R
PRSS56
AKIRIN1
SLC35E2A
ABHD11
KANSL3
FER1L5
CYTH4
HOXB5
MYEOV
PDE4D
PTGES3
HAND1
FOS
AGO1
NR2C1
MBD6
DDIT3
TMEM222
NOTCH2
FAF2
C12orf29
SRPRA
RBL2
HHIP
FCHSD2
SSX2IP
CTTN
PXYLP1
ZNF341
AHDC1
ATXN1L
UPP1
SNAPC3
CD164
TBX2
TRMT6
MCM8
ADGRL2
SLC39A13
CSRNP1
BAZ1B
SLAMF8
CALM2
ANKRD13D
DTNB
RNF103-CHMP3
RMND5A
TYROBP
UNC13D
TSPAN16
TTI2
PRRC2A
AIF1
PIP4P2
LAPTM5
MAP2K1
MYADM
CENPH
ZNRD2
GATD3B
GATD3A
FAM89B
EHBP1L1
CLTC
SEH1L
RFESD
CDC42EP2
ZNF25
USP42
ARHGAP45
RXRB
MTCH1
MAD1L1
SYNJ2
KCNH2
SLC10A2
IL21R
CXXC4
ZNF3
STX18
PHF19
PPCDC
DGAT2
THRAP3
RNF125
SLC43A3
LYPD6B
ERLIN2
RASGRP2
ARHGEF1
PEAK3
MRPS31
H2BC5
H1-4
GFRA3
COX5A
RAD50
MIDN
NAGLU
MAP1S
EPM2A
EIF4H
PKNOX1
WDR59
ATP8B4
HSD17B8
ZBTB17
TTYH1
PSMD3
PIKFYVE
SPATA25
CTSA
HECTD3
BHLHE40
KRI1
CDKN2D
NR1D1
ARL4A
SBNO2
MYO10
SDE2
KAT6A
FBXO41
RWDD2A
PGM3
MAPRE2
ARHGEF38
SMPD1
ZBTB25
ZBTB1
KEAP1
SALL1
MAPKBP1
BCAT2
FMNL1
PRKCD
GATA3
CPVL
CHN2
WTAP
GAD2
CCDC88B
STRADA
NUBP1
TMEM123
CBWD6
MTF2
SLC22A2
TCHP
SLC39A7
IFNGR1
ASNS
GRK6
MAGEF1
KRT20
MYCBP2
ZNF318
CPNE5
PEX3
ADAT2
PRKDC
MTRF1L
MCM4
LSM5
AVL9
NIBAN3
USPL1
HMGB1
NTAQ1
MC1R
FXYD2
RASL10B
PANK2
UBL7
C1orf159
ATAD3B
SCMH1
H3C12
H2BC17
H2AC17
ITPRIP
GPX4
MAST2
OR2L13
OR2AJ1
SACM1L
DYNLT1
NGRN
TCF4
SH3BGRL3
SALL4
MCU
HES7
BUD13
BNC2
TIGD5
EEF1D
DPEP1
SCAMP2
VPS37C
RUNX1
RNPEPL1
RER1
MORN1
CAPG
GRIP1
CISH
NIBAN2
EOLA2
ZNF436
ARF3
GPATCH8
RPL17-C18orf32
RPL17
C18orf32
TAF12
NCBP2AS2
NCBP2
LGALS1
OST4
ARHGAP27
YBX2
USP21
CYB5R4