ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584303 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◣ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
IPO13
RWDD1
MAPKAPK5
NME6
POLR3F
DZANK1
CACTIN
TAOK3
SUDS3
ZP4
PSMG2
CEP76
NUP85
VDAC2
FAM187A
EFTUD2
CCDC103
GRSF1
HSPA9
NVL
DYNC1LI2
ZNF503
SP5
POLR2E
C19orf48
RPL21
PMAIP1
ATP5MG
REXO1
STAM
STAM2
TBCK
AIMP1
TSN
VTI1B
GOSR2
NUP205
LEFTY2
MRPS7
GGA3
EXOSC5
BCKDHA
CAPRIN1
DCTN1
SEC61B
NDUFA4
BLCAP
PES1
PAK1IP1
C6orf52
UPF2
PNO1
ZNF576
IRGQ
NCLN
SKP1
NEUROG2
FARSB
SLC35B1
RBBP5
ACTR10
TSNAX
DPH6
GOLGA5
ARHGAP10
SRD5A1
NSUN2
SELENOF
HS2ST1
HADHB
HADHA
UBE2I
LYRM4
FARS2
TMED1
RPS12
PROSER1
NHLRC3
RBKS
BABAM2
PHOX2B
TTC8
VARS1
ICE1
PSMD12
PCBP1
MRPL11
RPS23
ATP6AP1L
SMC2
MRPS5
SPECC1
USP1
COX7A2L
ANAPC7
ZRANB2
FAM104A
C17orf80
SART3
ISCU
EIF4ENIF1
PI4KB
HES3
IQCG
RPL35A
SUPV3L1
RABGGTB
ADK
AP3M1
PDAP1
BUD31
UFM1
PAF1
MED29
CNTN1
APOM
BAG6
MUC12
PRSS56
TM9SF1
SF3B3
COG4
PAX6
XPNPEP3
ST13
NKD1
PTGES2
PRRX1
OSGEP
APEX1
COMMD1
CCT4
PIN4
FRG2C
PDZD2
DUX4
RPS27A
CLHC1
NFKBIL1
DDX39B
ATP6V1G2
STK36
RNF25
LZTS1
GRIP1
NEUROG1
NEUROG3
BICRA
RPS29
LRR1
TCF7L2
MSX1
OR6B2
NDUFA10
SUCLG1
EOLA2
IGFBP2
OR2L13
OR2AJ1
EIF2S3
SMC6
GEN1
ANKLE2
KLF17
TAF9
RAD17
AK6
RXRB
HSD17B8
SLC39A7
OAZ3
PDE6B
ZSWIM6
SLAMF8
TLE6
PDHX
APIP
SEC11C
OTX1
ARHGAP11A-SCG5
ARHGAP11A
CDX2
HOXA4
RPL7
RDH10
KLHL25
GADD45GIP1
CPSF4L
GPR78
ATOH1
GADD45G
CDC73
MRTO4
EMC1
CR1L
PCBD2
BNIP3
PDPN
MSX2
GTF3C4
DDX31
GORAB
HOXB3
HOXB4
CDX1
HES1
CNPY2
RPN1
HAO1
TMPPE
GLB1
ST18
KDM2B
METTL11B
WBP1L
RBBP7
PNKD
CSRNP1
DMBX1
ZNF383
FZD8
TRABD2B
SMPD1
AXDND1
STK38
SKIL
PRUNE2
SRCIN1
TLE3
FGF2
MALRD1
ALKBH5
TSHZ1
ZADH2
ZGPAT
ARFRP1
CCDC33
CACNA1D
SP7
LZTFL1
GAD2
CDH12
ALDH1A2
TTYH1
SRGAP2C
SRGAP2B
PALM2AKAP2
MMP3
HOXA3
EBP
CTXN3
SP8
SNCG
MMRN2
FGFR2
MRPL38
MYRIP
HES7
LIG3
HOXD3
LRATD2
ONECUT2
PDHB
MESP1
CLGN
SYBU
SULF1
HECTD3
HSPA1B
NKX2-2
SRSF11
LRRC40
MEIS2
ABLIM3
ADGRL2
YWHAB
NR6A1
TKT
GIMAP5
FRG2
LY6G6D
NEBL
MYBPH
C1QL3
CDC42EP2
RNF32
PBX3
PDE12
CCDC200
PAX4
TTLL6
VEZT
FGD6
DLL4
EIF4H
CPVL
CHN2
LRRC8C
FMOD
SPCS1
GLT8D1
FAM72D
FAM72C
APBA1
TBX3
HOXB8
CLDN9
GUK1
SNX1
CIAO2A
FAM3C
C11orf95
SOST
SLITRK5
ZDHHC1
NUP210
PCBP4
B4GALT5
SUSD6
DGKZ
HERPUD1
TLE2
MEIS3
LYPD6B
FAM107B
FBXW11
FOXD1
MYLK4
TBC1D8
TMEM123
NELFA
HHIP
TMEM131L
KDM8
H3C12
H2BC17
H2AC17
OTX2
HOXD1
DKK1
CNTN4
ULBP3
RPS24
POLR3A
BNIP2
ITPRIP
IPO8
HOXA9
HOXA7
TK1
AFMID
GCNT2
ARSI
EML4
HAS2
CCN1
ENO1
RASL10B
TRAP1
RABL3
GTF2E1
SH3D19
PTGES3
MYORG
C9orf24
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
UQCC2
CS
YAP1
LIN28B
CMTR1
LINGO1
ZNF471
HOXC4
PAX2
PKNOX2
OR52E2
CCDC43
EYA1
CFAP410
COQ3
KLF6
RPH3A
RPS10-NUDT3
RPS10
GATA3
PAPPA
AGO1
TCHP
MAB21L2
PPM1B
DAPL1
RARA
TPM1
HOXB7
CUEDC1
RNF138
CHD8
SEPHS1
CCDC85A
WDR74
PANK2
TPRA1
ARHGAP24
LIMCH1
AXIN2
RGSL1
TMEM70
ELOC
TPCN2
PROX1
INSM1
TMEM120B
ZNF746
EPHA5
NEUROD1
JCAD
KCNJ5
KIAA1522
MUSTN1
ITIH4
MAPK8
CCDC169-SOHLH2
CCDC169
HOXB1
NABP1
ADAMTS15
DSCAML1
HEBP1
FGF19
CDK5R1
GYPC
SERTAD3
ABCB5
ZFHX3
QPRT
FBXO46
MEIOSIN
PCDH18
LRGUK
VAMP8
VAMP5
HOXA1
LIN28A
MPZL2
WASHC3
CYP26A1
MTCH2
NPEPL1
ZNF341
KRTAP3-1
CRYM
KCNN2
RSPO4
CLDN2
FAM162A
CCDC58
ASIP
THEG
SPDYA
USP17L20
USP17L22
SHMT2
NFE2
PLAGL1
SLC7A5
SREBF1
SYT7
SLC35E3
CBX4
EVPL
USP17L15
ID2
COL11A2
BBS9
FOXP2
CYP51A1
EIF2S1
ATP6V1D
ADM
EMP3
CCDC114
DTNB
KDM3A
LRRC10B
RUNX1T1
CLDN3
SH2B1
MCC
STK4
TOMM34
ID3
OAS1
LSM14B
TRDMT1
GABRR1
NUTM2D
MSI2
BRINP1
ADAM18
TESC
IRS2
ACSM6
SOX12
LRAT
CERS6
DRD2
DST
PAX3
ABCA5
LIMS1
KDM6B
TBC1D10A
SALL4
KAT6B
ZGRF1
LARP7
CD36
TMEM107
CD99L2
MBNL3
RARB
OCLN
ZMAT4
KIRREL2
NRARP
METTL24
PKD1
XIAP
VENTX
MRPL34
ABHD8
DDA1
PEPD
PAX8
CYREN
NEDD9
PACSIN2
TCF20
GAS2L1
SALL1
ANO4
DCTN3
ARID3C
KMT2A
ERCC1
FAM72B
MPP4
ANK2
RASL11B
BAZ2B
HHIPL2
CATSPERG
SLC10A2
TBL1XR1
MAP1A
WBP4
ELF1
ABHD11
CENPBD1
DHX32
ASS1
PPFIBP2
SIPA1
REC8
PTGR1
LPIN1
RCOR3
GBX2
CEMP1
OR8J1
STARD4
PDPK1
CSNK2A2
RPRM
PRICKLE1
MRGPRE
ARID5B
SIK1B
SIK1
CDK15
PHC2
FTL
KRT20
TLE4
SERPING1
GOLGA6L4
NPAS4
H4C6
CSTF2T
TLE1
PAH
ASCL1
ERRFI1
HOXC5
HOXC6
HRK
C3orf52
TFDP2
STX3
HOXA6
BTRC
ZFHX4
BRWD1
SOCS3
RBM20
CER1
ECM2
ZNF76
AHDC1
DEFB106B
DEFB106A
ZCWPW1
MEPCE
MSGN1
PRTG
POLR1D
LNX2
PLEKHA5
RNF38
MVB12A
SPRY4
EPHA1
PRTFDC1
GXYLT2
MGST1
DLL3
CEP97
PRDX6
WNT5B
MNX1
ZNF474
RCN1
CTBP2
ERLIN2
SPATA25
CTSA
NEURL2
TAGLN3
PEX14
DFFA
TLN1
CREB3
PLEKHA6
REST
DDX46
DMAP1
RBFOX2
NFIX
GNAI2
RFFL
BAK1
ADAMTS19
SLC39A8
KRTAP4-12
GLI1
NAV1
STRADA
KLHL15
SPIN1
IFI16
OTUD7B
BCAT2
CASC3
DUSP4
KSR1
DUSP12
LHX2
SOX6
NDUFS7
GPX3
TPST2
DRAP1
C11orf68
ZBTB45
ARHGEF38
ATXN7
PCF11
STRA6
LBX1
HOXA2
NBAS
IGFBP6
CDCA7L
C16orf91
DLX4
SEC22B
DUSP6
RBPJ
DNAJB7
SOAT2
ARID3B
GATA4
RGS12
SMPDL3A
TRIP10
GPR108
MTRNR2L2
MSH3
DHFR
POP5
NR2F1
ARSG
KAZALD1
MTRNR2L1
FOXP1
PRDM12
RASSF2
BFSP1
EVA1A
IER3
FLOT1
NEK3
FGR
PKDCC
PLEKHO2
INAFM2
MBD2
SPATC1L
DBX1
RNF149
SH3BP2
UPF3A
LYL1
ZNF608
VOPP1
HNRNPA2B1
CBX3
HUS1
DHRS3
HEXIM2
GTF3A
ETFBKMT
TMEM14A
PANK4
HES5
ARID5A
CITED2
ABCG2
NEO1
KCNAB2
JAK3
MRS2
PARK7
TIGD1
EIF4E2
CCPG1
C15orf65
ID1
RPS6KA1
SEC14L1
FRAT2
C11orf24
SASH3
RAI14
PDZRN3
C12orf73
HNRNPD
ATG16L2
KIF21B
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
UBXN10
NCOR2
GRHL3
LYPD1
PRDM10
SLCO4C1
CCDC88A
ARHGEF10L
NADK
FGFRL1
BIN2
WDR6
NBEAL2
SKIV2L
NELFE
EFHD2
FAM110A
NCOA2
REV3L
TMEM104
NAT9
MTMR4
DIAPH1
NBPF1
USP15
CAMTA1
PLEC
WNT10B
SNX3
POR
USP17L11
LRRN4
MEF2C
TRAF4
MEF2D
USP17L18
USP17L21
USP17L12
KMT2E
CABIN1
MXI1
SOX21
RASSF5
LPCAT3
MTRNR2L8
LNPEP
RARG
IMPG1
SPG7
DDX3X
DENND2D
PPP1R18
CDC42EP3
ZNF367
SHOX2
RSRC1
CCDC174
DIAPH3
IQCH
AAGAB
NFKBIA
HEBP2
CBFA2T3
ZCCHC3
MAMDC2
CD38
VAV1
ZNF414
INAVA
BCL3
TRERF1
RAC2
LRIG3
ATP23
ZNF718
ZNF595
PCNA
POLR2J3
TUBB
SYNPO
IQGAP2
SPACA1
MEOX1
LRIG1
TYRO3
NTRK2
ING1
RNASEH2B
GPAA1
EXOSC4
PPIB
MINDY2
H6PD
CNOT2
SLC9A1
SIRT4
RXRA
GALNT10
PKN2
NDFIP2
MAPKAPK3
PLCB2
SMAD3
RYBP
USP3
ADCY7
TRIM48
SHB
NKIRAS1
TXNRD1
MOBP
FAM120B
ARHGAP4
YTHDF2
SMARCD2
PKM
IFRD2
PCTP
PRDM1
HESX1
CFD
MRPS24
SLC35E2B
TBRG4
NR1D2
ADORA2A
COL23A1
RNF166
CYCS
RNF139
RAB11B
IGF2BP3
ANKRD1
SH3TC1
DYNLL1
ZDHHC4
BAIAP2
CEP41
HMGCS1
ARIH2
MECOM
CBWD5
CBWD3
LTBR
TUBB3
ANKMY1
DPP9
SBF1
PIK3AP1
CLIC4
ARID2
ERI3
ZNF740
CSAD
SOD2
KCTD6
SEMA6D
CPT1A
DTX4
IL6R
AKIRIN1
KIF26A
SLC35E2A
ZFX
KANSL3
FER1L5
CYTH4
HOXB5
MYEOV
PDE4D
HAND1
FOS
PCDH11Y
NR2C1
MBD6
DDIT3
TMEM222
NOTCH2
FAF2
C12orf29
RND3
SRPRA
RBL2
HNF1A
NXPH4
FCHSD2
SSX2IP
DMRT3
CTTN
PXYLP1
ATXN1L
UPP1
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
BAZ1B
CALM2
ANKRD13D
RNF103-CHMP3
RMND5A
TYROBP
UNC13D
SEMA4D
TSPAN16
TTI2
PRRC2A
AIF1
PIP4P2
LAPTM5
MAP2K1
MYADM
CENPH
ZNRD2
GATD3B
GATD3A
FAM89B
EHBP1L1
CLTC
SEH1L
RFESD
ZNF25
VANGL2
USP42